Variant report

Variant	rs13400130
Chromosome Location	chr2:210990791-210990792
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs10201777	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431969	chr2:210682494-211074494	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv1004426	chr2:210709999-211001680	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	esv1795338	chr2:210758078-211098113	Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
4	esv1802749	chr2:210905194-211255611	Strong transcription ZNF genes & repeats Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:210921200-210991200	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr2:210963400-210995600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr2:210965000-211009800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr2:210976400-210991200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr2:210978000-211010600	Weak transcription	Small Intestine	intestine
6	chr2:210978200-211009600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr2:210979200-211005000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr2:210981200-210991200	Weak transcription	Left Ventricle	heart
9	chr2:210981200-210992400	Weak transcription	Lung	lung
10	chr2:210981400-211009600	Weak transcription	Pancreas	Pancrea
11	chr2:210981400-211009800	Weak transcription	Gastric	stomach
12	chr2:210981600-211009600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr2:210982200-211001800	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr2:210983600-210991200	Weak transcription	Thymus	Thymus
15	chr2:210983600-211009600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr2:210985000-210992200	Weak transcription	Ovary	ovary
17	chr2:210985200-210990800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
18	chr2:210985200-210991200	Weak transcription	Aorta	Aorta
19	chr2:210985200-210991200	Weak transcription	Fetal Stomach	stomach
20	chr2:210987800-210991000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr2:210988400-210991000	Weak transcription	Dnd41	blood
22	chr2:210988400-210991200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
23	chr2:210989200-211010000	Weak transcription	Osteobl	bone
24	chr2:210989400-210991200	Weak transcription	Placenta	Placenta
25	chr2:210989600-210994000	Strong transcription	Fetal Thymus	thymus
26	chr2:210989800-210991200	Weak transcription	Fetal Intestine Small	intestine
27	chr2:210990000-210990800	ZNF genes & repeats	Primary neutrophils fromperipheralblood	blood
28	chr2:210990000-210991000	ZNF genes & repeats	Primary T cells from cord blood	blood
29	chr2:210990000-210992200	ZNF genes & repeats	Brain Hippocampus Middle	brain
30	chr2:210990000-210992400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr2:210990000-210993000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr2:210990200-210991000	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
33	chr2:210990200-210991000	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
34	chr2:210990200-210991200	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr2:210990200-210991200	Strong transcription	Primary monocytes fromperipheralblood	blood
36	chr2:210990200-210991200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
37	chr2:210990200-210991400	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr2:210990200-210991400	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
39	chr2:210990200-210991400	Strong transcription	HSMMtube	muscle
40	chr2:210990200-210991800	ZNF genes & repeats	Brain Germinal Matrix	brain
41	chr2:210990200-210992000	ZNF genes & repeats	Adipose Nuclei	Adipose
42	chr2:210990200-210992000	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
43	chr2:210990200-210992200	ZNF genes & repeats	Brain Anterior Caudate	brain
44	chr2:210990200-210992400	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
45	chr2:210990200-210992400	ZNF genes & repeats	Fetal Lung	lung
46	chr2:210990200-210994000	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
47	chr2:210990200-210994000	Strong transcription	Fetal Kidney	kidney
48	chr2:210990400-210990800	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
49	chr2:210990400-210990800	Strong transcription	Primary hematopoietic stem cells	blood
50	chr2:210990400-210990800	ZNF genes & repeats	Duodenum Mucosa	Duodenum

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