Variant report

Variant	rs13400391
Chromosome Location	chr2:213485866-213485867
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10171052	0.96[EUR][1000 genomes]
rs10179457	0.89[EUR][1000 genomes]
rs10179622	0.89[EUR][1000 genomes]
rs10180242	1.00[EUR][1000 genomes]
rs10186885	1.00[EUR][1000 genomes]
rs10193213	1.00[EUR][1000 genomes]
rs10204755	0.89[EUR][1000 genomes]
rs10205609	1.00[EUR][1000 genomes]
rs10210112	0.89[EUR][1000 genomes]
rs13383234	1.00[EUR][1000 genomes]
rs13384047	0.89[EUR][1000 genomes]
rs13384253	0.89[EUR][1000 genomes]
rs13384610	0.85[EUR][1000 genomes]
rs13401993	0.89[EUR][1000 genomes]
rs13402051	0.89[EUR][1000 genomes]
rs13402119	0.89[EUR][1000 genomes]
rs13404602	0.89[EUR][1000 genomes]
rs13404790	0.89[EUR][1000 genomes]
rs13405155	0.89[EUR][1000 genomes]
rs13415082	1.00[EUR][1000 genomes]
rs13418175	0.89[EUR][1000 genomes]
rs13418296	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13418412	0.89[EUR][1000 genomes]
rs13418742	0.81[EUR][1000 genomes]
rs13424239	0.91[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs13426180	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1987801	0.89[EUR][1000 genomes]
rs2054614	1.00[EUR][1000 genomes]
rs28794520	1.00[EUR][1000 genomes]
rs56159667	0.89[EUR][1000 genomes]
rs56164335	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6754237	0.81[EUR][1000 genomes]
rs72933024	0.81[EUR][1000 genomes]
rs72937326	1.00[EUR][1000 genomes]
rs72937336	1.00[EUR][1000 genomes]
rs72937359	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72937369	0.93[EUR][1000 genomes]
rs72937379	1.00[EUR][1000 genomes]
rs72949047	0.89[EUR][1000 genomes]
rs72949055	0.89[EUR][1000 genomes]
rs7585872	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948878	chr2:213345197-213534298	Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv875813	chr2:213480637-213509809	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:213485400-213504800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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