Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:56048786..56051485-chr2:56052359..56054883,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10173401	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10173540	0.81[AMR][1000 genomes]
rs10186499	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10189460	0.81[AMR][1000 genomes]
rs10196888	0.81[AMR][1000 genomes]
rs11680015	0.86[ASN][1000 genomes]
rs11682872	0.88[ASN][1000 genomes]
rs11695502	0.86[ASN][1000 genomes]
rs13394642	0.81[AMR][1000 genomes]
rs13403273	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13413609	0.81[AMR][1000 genomes]
rs28744383	0.81[AMR][1000 genomes]
rs4260283	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56122343	0.88[ASN][1000 genomes]
rs59870589	0.88[ASN][1000 genomes]
rs59877895	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6723695	0.81[AMR][1000 genomes]
rs72807729	0.86[AMR][1000 genomes]
rs72807735	0.86[AMR][1000 genomes]
rs7577580	0.81[AMR][1000 genomes]
rs7604558	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531374	chr2:55653723-56299784	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	56 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:56050400-56054400	Weak transcription	A549	lung
2	chr2:56051600-56053200	Enhancers	Placenta	Placenta
3	chr2:56051800-56053600	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell

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