Variant report

Variant	rs13407248
Chromosome Location	chr2:180579145-180579146
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:180572088..180573677-chr2:180578473..180581358,2	MCF-7	breast:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10177883	0.91[CHB][hapmap];0.98[CHD][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs12467122	0.91[CHB][hapmap];0.86[JPT][hapmap]
rs1462208	0.86[CHB][hapmap];0.84[CHD][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.85[MKK][hapmap]
rs1515294	0.91[CHB][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs16866934	0.87[CHB][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs16866936	0.95[CHB][hapmap];0.98[CHD][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs16866942	0.93[ASN][1000 genomes]
rs16866943	0.91[ASN][1000 genomes]
rs16866944	0.95[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs16866945	0.95[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs16866953	0.91[CHB][hapmap];0.87[JPT][hapmap]
rs17496658	0.91[CHB][hapmap];0.95[CHD][hapmap];0.95[JPT][hapmap];0.83[ASN][1000 genomes]
rs17499149	0.91[CHB][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs17499156	0.91[CHB][hapmap];0.95[CHD][hapmap];0.95[JPT][hapmap];0.83[ASN][1000 genomes]
rs1964081	0.86[CHB][hapmap];0.87[CHD][hapmap];0.86[JPT][hapmap];0.82[ASN][1000 genomes]
rs2840142	0.83[ASN][1000 genomes]
rs56142641	0.88[ASN][1000 genomes]
rs58143036	0.85[ASN][1000 genomes]
rs59431424	0.93[ASN][1000 genomes]
rs59642995	0.93[ASN][1000 genomes]
rs61200535	0.94[ASN][1000 genomes]
rs73973703	0.86[ASN][1000 genomes]
rs7559882	0.82[CHB][hapmap];0.87[CHD][hapmap];0.87[JPT][hapmap]
rs7582108	0.95[CHB][hapmap];0.95[CHD][hapmap];0.95[JPT][hapmap];0.91[ASN][1000 genomes]
rs7584651	0.93[ASN][1000 genomes]
rs7584968	0.93[ASN][1000 genomes]
rs881737	0.95[CHB][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002305	chr2:180568558-180812846	Enhancers Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:180572600-180582200	Weak transcription	Right Atrium	heart

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