Variant report

Variant	rs13407307
Chromosome Location	chr2:37751784-37751785
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:37750494..37753126-chr2:37755282..37758180,2	MCF-7	breast:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10084269	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10165975	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10177794	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10177859	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10180573	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10184286	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11124588	0.91[ASN][1000 genomes]
rs12151799	0.90[ASN][1000 genomes]
rs12472489	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4274577	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4352210	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4387769	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4430920	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4461243	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4538180	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4670726	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4670727	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62135619	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62135620	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62135623	0.85[ASN][1000 genomes]
rs6544089	0.93[ASN][1000 genomes]
rs6544090	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6705305	0.90[ASN][1000 genomes]
rs6715817	0.81[ASN][1000 genomes]
rs6759677	0.99[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7419452	0.84[ASN][1000 genomes]
rs7589042	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7593076	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9309009	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9309010	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833814	chr2:37643132-37840247	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv456374	chr2:37669487-37868214	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv470453	chr2:37669487-37868214	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv581473	chr2:37669487-37868214	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:37749200-37752800	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr2:37749800-37751800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr2:37749800-37752200	Enhancers	Rectal Smooth Muscle	rectum
4	chr2:37749800-37752600	Enhancers	Fetal Brain Female	brain
5	chr2:37750000-37752800	Enhancers	Fetal Heart	heart
6	chr2:37750200-37752600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr2:37750200-37752800	Enhancers	Primary monocytes fromperipheralblood	blood
8	chr2:37750400-37751800	Enhancers	NHLF	lung
9	chr2:37750400-37752200	Enhancers	Breast Myoepithelial Primary Cells	Breast
10	chr2:37750400-37752600	Enhancers	Fetal Muscle Leg	muscle
11	chr2:37750400-37752600	Enhancers	NHDF-Ad	bronchial
12	chr2:37750400-37752800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr2:37750400-37752800	Enhancers	Fetal Stomach	stomach
14	chr2:37750600-37751800	Enhancers	Duodenum Smooth Muscle	Duodenum
15	chr2:37750600-37752000	Enhancers	Ovary	ovary
16	chr2:37750800-37751800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr2:37750800-37751800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
18	chr2:37750800-37752200	Enhancers	Liver	Liver
19	chr2:37750800-37752600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr2:37750800-37752600	Enhancers	Osteobl	bone
21	chr2:37751000-37751800	Enhancers	Fetal Kidney	kidney
22	chr2:37751000-37751800	Enhancers	Hela-S3	cervix
23	chr2:37751000-37752000	Enhancers	Primary neutrophils fromperipheralblood	blood
24	chr2:37751000-37752000	Enhancers	Skeletal Muscle Male	skeletal muscle
25	chr2:37751000-37752600	Enhancers	Skeletal Muscle Female	skeletal muscle
26	chr2:37751200-37751800	Enhancers	Primary hematopoietic stem cells short term culture	blood
27	chr2:37751200-37751800	Enhancers	Muscle Satellite Cultured Cells	--
28	chr2:37751200-37751800	Flanking Active TSS	Colon Smooth Muscle	Colon
29	chr2:37751200-37751800	Enhancers	Duodenum Mucosa	Duodenum
30	chr2:37751200-37751800	Enhancers	Placenta	Placenta
31	chr2:37751200-37751800	Enhancers	Fetal Thymus	thymus
32	chr2:37751200-37751800	Enhancers	Rectal Mucosa Donor 29	rectum
33	chr2:37751200-37752000	Enhancers	Primary B cells from cord blood	blood
34	chr2:37751200-37752000	Enhancers	Fetal Brain Male	brain
35	chr2:37751200-37752000	Enhancers	Left Ventricle	heart
36	chr2:37751200-37752000	Enhancers	Lung	lung
37	chr2:37751200-37752000	Enhancers	Right Atrium	heart
38	chr2:37751200-37752600	Enhancers	Aorta	Aorta
39	chr2:37751200-37752600	Enhancers	Sigmoid Colon	Sigmoid Colon
40	chr2:37751200-37752800	Enhancers	Psoas Muscle	Psoas
41	chr2:37751400-37752600	Enhancers	Right Ventricle	heart
42	chr2:37751400-37753600	Weak transcription	Pancreatic Islets	Pancreatic Islet
43	chr2:37751600-37751800	Flanking Active TSS	Stomach Smooth Muscle	stomach
44	chr2:37751600-37752000	Enhancers	Adipose Nuclei	Adipose
45	chr2:37751600-37752000	Enhancers	Fetal Muscle Trunk	muscle
46	chr2:37751600-37752400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
47	chr2:37751600-37752400	Enhancers	Fetal Lung	lung
48	chr2:37751600-37758600	Weak transcription	HMEC	breast
49	chr2:37751600-37763000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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