Variant report

Variant	rs13414987
Chromosome Location	chr2:21141832-21141833
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11673955	0.81[EUR][1000 genomes]
rs3923672	0.83[EUR][1000 genomes]
rs4072815	0.98[ASN][1000 genomes]
rs4362515	0.82[EUR][1000 genomes]
rs4479392	0.91[ASN][1000 genomes]
rs4533439	0.89[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs6731905	0.91[ASN][1000 genomes]
rs6732027	0.91[ASN][1000 genomes]
rs6755762	0.86[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs72888845	0.93[ASN][1000 genomes]
rs7565511	0.91[ASN][1000 genomes]
rs7580543	0.90[ASN][1000 genomes]
rs7586740	0.90[ASN][1000 genomes]
rs7588415	0.91[ASN][1000 genomes]
rs7594084	0.90[ASN][1000 genomes]
rs7596102	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv455852	chr2:21125742-21143329	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv581169	chr2:21125742-21143329	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs13414987	UBXN2A	cis	parietal	SCAN
rs13414987	C2orf44	cis	cerebellum	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:21133400-21149400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr2:21141400-21142200	Weak transcription	Ovary	ovary
3	chr2:21141600-21142600	Weak transcription	Fetal Kidney	kidney

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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