Variant report

Variant	rs13418296
Chromosome Location	chr2:213524128-213524129
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs1002617	0.80[EUR][1000 genomes]
rs10171052	0.93[EUR][1000 genomes]
rs10179457	1.00[EUR][1000 genomes]
rs10179622	1.00[EUR][1000 genomes]
rs10180242	0.89[EUR][1000 genomes]
rs10186885	0.89[EUR][1000 genomes]
rs10193213	0.89[EUR][1000 genomes]
rs10204755	1.00[EUR][1000 genomes]
rs10205609	0.89[EUR][1000 genomes]
rs10210112	1.00[EUR][1000 genomes]
rs13383234	0.89[EUR][1000 genomes]
rs13384047	1.00[EUR][1000 genomes]
rs13384253	1.00[EUR][1000 genomes]
rs13400391	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13401993	1.00[EUR][1000 genomes]
rs13402051	1.00[EUR][1000 genomes]
rs13402119	1.00[EUR][1000 genomes]
rs13404602	1.00[EUR][1000 genomes]
rs13404790	1.00[EUR][1000 genomes]
rs13405155	1.00[EUR][1000 genomes]
rs13415082	0.89[EUR][1000 genomes]
rs13418175	1.00[EUR][1000 genomes]
rs13418412	1.00[EUR][1000 genomes]
rs13418742	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13424239	0.91[AFR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13426180	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs16849091	1.00[ASN][1000 genomes]
rs1987801	1.00[EUR][1000 genomes]
rs2054614	0.89[EUR][1000 genomes]
rs28794520	0.89[EUR][1000 genomes]
rs56159667	1.00[EUR][1000 genomes]
rs56164335	0.81[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs6754237	0.92[EUR][1000 genomes]
rs72933024	0.92[EUR][1000 genomes]
rs72933056	1.00[ASN][1000 genomes]
rs72937326	0.89[EUR][1000 genomes]
rs72937336	0.89[EUR][1000 genomes]
rs72937359	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72937369	0.82[EUR][1000 genomes]
rs72937379	0.89[EUR][1000 genomes]
rs72949047	1.00[EUR][1000 genomes]
rs72949055	1.00[EUR][1000 genomes]
rs7585872	0.89[EUR][1000 genomes]
rs7596833	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948878	chr2:213345197-213534298	Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:213524000-213524600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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