Variant report

Variant	rs13425730
Chromosome Location	chr2:181870704-181870705
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:181842452..181845070-chr2:181870546..181873259,2	K562	blood:
2	chr2:181845646..181847963-chr2:181870401..181872201,2	K562	blood:
3	chr2:181866269..181868197-chr2:181870561..181872508,2	K562	blood:
4	chr2:181843343..181846731-chr2:181867480..181871457,3	MCF-7	breast:
5	chr2:181842452..181845003-chr2:181870312..181872046,2	K562	blood:

Variant related genes	Relation type
ENSG00000170035	Chromatin interaction
ENSG00000236153	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10167039	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10172609	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs10177379	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs10179247	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.90[ASN][1000 genomes]
rs10180373	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10180999	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10186928	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[ASN][1000 genomes]
rs10190282	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10203057	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10203106	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10206321	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13389513	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13396254	1.00[CEU][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13399193	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13406482	0.82[YRI][hapmap];0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13409312	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13418807	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[ASN][1000 genomes]
rs13418851	1.00[CEU][hapmap]
rs13420090	0.90[ASN][1000 genomes]
rs13420526	1.00[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs13420661	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13425162	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs13425173	1.00[CEU][hapmap]
rs13429008	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.90[ASN][1000 genomes]
rs2292855	1.00[CEU][hapmap]
rs28887797	0.90[ASN][1000 genomes]
rs4077214	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4618006	0.85[ASN][1000 genomes]
rs4618007	0.85[ASN][1000 genomes]
rs6706552	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6721173	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6722001	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6761219	1.00[ASN][1000 genomes]

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:181846600-181872400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr2:181847000-181873200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr2:181849000-181872800	Weak transcription	Fetal Intestine Large	intestine
4	chr2:181849400-181880000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr2:181850000-181873000	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr2:181851000-181872200	Weak transcription	Left Ventricle	heart
7	chr2:181851200-181876200	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr2:181854600-181872800	Weak transcription	NHLF	lung
9	chr2:181855200-181871000	Weak transcription	HUVEC	blood vessel
10	chr2:181855600-181872400	Weak transcription	Adipose Nuclei	Adipose
11	chr2:181856800-181872800	Weak transcription	NHDF-Ad	bronchial
12	chr2:181856800-181873200	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr2:181856800-181873200	Weak transcription	Fetal Kidney	kidney
14	chr2:181856800-181897200	Weak transcription	Primary B cells from cord blood	blood
15	chr2:181857400-181875000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr2:181857600-181872400	Weak transcription	Fetal Stomach	stomach
17	chr2:181857600-181873000	Weak transcription	Skeletal Muscle Female	skeletal muscle
18	chr2:181857600-181879200	Weak transcription	Fetal Muscle Trunk	muscle
19	chr2:181857800-181901200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr2:181858200-181873000	Weak transcription	Psoas Muscle	Psoas
21	chr2:181858200-181873200	Weak transcription	Fetal Muscle Leg	muscle
22	chr2:181858200-181878000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr2:181858400-181874400	Weak transcription	Osteobl	bone
24	chr2:181858600-181873800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr2:181859200-181871400	Weak transcription	HMEC	breast
26	chr2:181860000-181873000	Weak transcription	NH-A	brain
27	chr2:181860000-181894800	Weak transcription	Primary hematopoietic stem cells	blood
28	chr2:181860200-181871600	Weak transcription	HSMM	muscle
29	chr2:181861400-181875000	Weak transcription	Primary T cells from cord blood	blood
30	chr2:181863600-181872400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr2:181864400-181872800	Weak transcription	Muscle Satellite Cultured Cells	--
32	chr2:181864600-181875000	Weak transcription	Brain Anterior Caudate	brain
33	chr2:181864600-181879000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr2:181865600-181878000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr2:181866600-181875200	Weak transcription	HUES64 Cell Line	embryonic stem cell
36	chr2:181867000-181872000	Weak transcription	Small Intestine	intestine
37	chr2:181867000-181872800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
38	chr2:181867000-181875000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
39	chr2:181867600-181873000	Weak transcription	Duodenum Mucosa	Duodenum
40	chr2:181867800-181881400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
41	chr2:181868000-181872000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr2:181868000-181872000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
43	chr2:181868200-181873000	Weak transcription	Fetal Heart	heart
44	chr2:181868600-181871000	Enhancers	Gastric	stomach
45	chr2:181869400-181870800	Enhancers	Stomach Mucosa	stomach
46	chr2:181869400-181879800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
47	chr2:181869600-181871200	Enhancers	Liver	Liver
48	chr2:181869600-181871400	Enhancers	Pancreatic Islets	Pancreatic Islet
49	chr2:181869600-181872400	Enhancers	HepG2	liver
50	chr2:181869800-181870800	Enhancers	Fetal Brain Female	brain

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