Variant report

Variant	rs13429194
Chromosome Location	chr2:11712088-11712089
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:11710630..11712541-chr2:11713700..11716597,2	K562	blood:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs13428862	0.92[EUR][1000 genomes]
rs4669751	0.94[ASN][1000 genomes]
rs59563963	0.89[EUR][1000 genomes]
rs6432216	0.84[ASN][1000 genomes]
rs6432218	0.81[EUR][1000 genomes]
rs6432219	0.92[ASN][1000 genomes]
rs6740248	0.81[EUR][1000 genomes]
rs7565567	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010506	chr2:11430965-12057286	Enhancers Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
2	nsv535585	chr2:11430965-12057286	Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
3	nsv873663	chr2:11664349-11783775	Genic enhancers Weak transcription ZNF genes & repeats Strong transcription Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
4	esv1814335	chr2:11689048-11718858	Weak transcription Genic enhancers Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:11678400-11757000	Weak transcription	Right Ventricle	heart
2	chr2:11694800-11755200	Weak transcription	Gastric	stomach
3	chr2:11697000-11722600	Weak transcription	Brain Hippocampus Middle	brain
4	chr2:11697000-11723000	Weak transcription	Brain Anterior Caudate	brain
5	chr2:11697000-11723200	Weak transcription	Brain Angular Gyrus	brain
6	chr2:11698600-11713200	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr2:11698600-11713400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr2:11698800-11713400	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr2:11699000-11714400	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr2:11699800-11713200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr2:11699800-11718400	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr2:11699800-11723000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr2:11700000-11767000	Weak transcription	Right Atrium	heart
14	chr2:11700200-11712400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr2:11700200-11713800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr2:11700200-11723000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr2:11700400-11713000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
18	chr2:11700400-11718400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr2:11702800-11720200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr2:11702800-11722400	Strong transcription	HepG2	liver
21	chr2:11703000-11713400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr2:11703000-11717400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr2:11704000-11720600	Weak transcription	Fetal Heart	heart
24	chr2:11705200-11713600	Weak transcription	Fetal Lung	lung
25	chr2:11705600-11714600	Weak transcription	Psoas Muscle	Psoas
26	chr2:11706000-11712800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
27	chr2:11707000-11715400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr2:11707200-11720600	Weak transcription	Brain Substantia Nigra	brain
29	chr2:11707800-11722200	Weak transcription	Brain Inferior Temporal Lobe	brain
30	chr2:11708200-11713400	Weak transcription	Fetal Stomach	stomach
31	chr2:11708400-11713000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr2:11708400-11713600	Weak transcription	Colon Smooth Muscle	Colon
33	chr2:11708800-11713200	Weak transcription	HUES6 Cell Line	embryonic stem cell
34	chr2:11708800-11713400	Weak transcription	HUES64 Cell Line	embryonic stem cell
35	chr2:11708800-11713800	Weak transcription	Fetal Muscle Trunk	muscle
36	chr2:11708800-11718800	Weak transcription	Fetal Muscle Leg	muscle
37	chr2:11709000-11716600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
38	chr2:11709400-11713200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
39	chr2:11709800-11724200	Weak transcription	Brain Cingulate Gyrus	brain
40	chr2:11710000-11722600	Weak transcription	Pancreas	Pancrea
41	chr2:11711200-11719000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
42	chr2:11711600-11717400	Weak transcription	Lung	lung
43	chr2:11711600-11723200	Weak transcription	Cortex derived primary cultured neurospheres	brain
44	chr2:11711600-11738600	Weak transcription	Left Ventricle	heart
45	chr2:11711800-11718200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
46	chr2:11712000-11713400	Genic enhancers	Ovary	ovary

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