Variant report

Variant	rs13429925
Chromosome Location	chr2:128074433-128074434
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 22 )

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10167294	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10928764	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1143407	0.89[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];0.97[GIH][hapmap];0.94[JPT][hapmap];0.91[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.80[YRI][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11684068	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11899601	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12613252	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12613254	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12613413	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12614320	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12617858	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12619391	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13017103	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13034157	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13390029	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13403918	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13409933	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13414676	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2134794	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.91[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.80[YRI][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2139142	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2276682	1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2276683	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28807127	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3088374	0.91[CHB][hapmap];0.94[CHD][hapmap];0.89[JPT][hapmap];0.93[ASN][1000 genomes]
rs34006114	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34441363	0.90[EUR][1000 genomes]
rs34487399	0.91[EUR][1000 genomes]
rs34601617	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34703177	0.95[CEU][hapmap];0.81[GIH][hapmap];0.82[MEX][hapmap];0.85[TSI][hapmap];0.90[EUR][1000 genomes]
rs35708549	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3738948	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.80[YRI][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3893313	0.93[EUR][1000 genomes]
rs4150434	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.80[YRI][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4150492	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4150506	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4150514	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4300780	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4359587	0.93[EUR][1000 genomes]
rs4528711	0.88[EUR][1000 genomes]
rs4662721	1.00[ASW][hapmap];0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];0.96[TSI][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4662724	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs58063879	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs59027829	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6430937	1.00[ASW][hapmap];1.00[CEU][hapmap];0.91[CHB][hapmap];0.92[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6716392	1.00[ASW][hapmap];0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.92[MEX][hapmap];0.88[MKK][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6735779	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6738811	0.89[EUR][1000 genomes]
rs6747862	0.95[CEU][hapmap];0.90[EUR][1000 genomes]
rs6752139	0.89[EUR][1000 genomes]
rs6761391	0.80[CHB][hapmap]
rs67771362	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7584659	0.87[ASN][1000 genomes]
rs9752366	0.84[EUR][1000 genomes]
rs9923	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

mRNA abundance (count:22)

SNP	Gene	Cis/trans	Tissue	Source
rs13429925	AC068282.3	cis	Heart Left Ventricle	GTEx
rs13429925	AC068282.3	cis	Artery Tibial	GTEx
rs13429925	MAP3K2	cis	Temporal Cortex	GTEx
rs13429925	MAP3K2	cis	Frontal Cortex	GTEx
rs13429925	AC068282.3	cis	Skin Sun Exposed Lower leg	GTEx
rs13429925	AC068282.3	cis	Adipose Subcutaneous	GTEx
rs13429925	AC068282.3	cis	Thyroid	GTEx
rs13429925	AC068282.3	cis	Stomach	GTEx
rs13429925	AC068282.3	cis	Whole Blood	GTEx
rs13429925	AC068282.3	cis	Nerve Tibial	GTEx
rs13429925	AC068282.3	cis	Esophagus Mucosa	GTEx
rs13429925	MAP3K2	cis	lymphoblastoid	seeQTL
rs13429925	GYPC	cis	parietal	SCAN
rs13429925	AC068282.3	cis	lung	GTEx
rs13429925	AC068282.3	cis	Esophagus Muscularis	GTEx
rs13429925	AC068282.3	cis	Muscle Skeletal	GTEx
rs13429925	TUBA3E	cis	parietal	SCAN
rs13429925	MAP3K2	cis	cerebellum	SCAN
rs13429925	MAP3K2	cis	Brain Pons	GTEx
rs13429925	MAP3K2	cis	multi-tissue	Pritchard
rs13429925	MAP3K2	cis	Cerebellum	GTEx
rs13429925	AC068282.3	cis	Artery Aorta	GTEx

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:128058600-128085600	Strong transcription	Primary B cells from cord blood	blood
2	chr2:128059400-128082800	Strong transcription	Liver	Liver
3	chr2:128059400-128109600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr2:128059800-128093000	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr2:128061200-128077600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr2:128061600-128098200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
7	chr2:128061800-128096800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr2:128062000-128077600	Strong transcription	Fetal Intestine Large	intestine
9	chr2:128062000-128077800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr2:128062000-128083200	Strong transcription	Primary T cells from cord blood	blood
11	chr2:128062000-128085000	Strong transcription	Duodenum Mucosa	Duodenum
12	chr2:128062000-128086600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr2:128062400-128094000	Strong transcription	Rectal Mucosa Donor 29	rectum
14	chr2:128062600-128077600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
15	chr2:128062600-128077800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr2:128062600-128077800	Strong transcription	Dnd41	blood
17	chr2:128062600-128078000	Strong transcription	Fetal Thymus	thymus
18	chr2:128062600-128083400	Strong transcription	Fetal Muscle Trunk	muscle
19	chr2:128062600-128083400	Strong transcription	Thymus	Thymus
20	chr2:128062600-128089400	Strong transcription	Primary T helper cells fromperipheralblood	blood
21	chr2:128062800-128077800	Strong transcription	Primary T cells fromperipheralblood	blood
22	chr2:128062800-128098000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
23	chr2:128063000-128076200	Strong transcription	Brain Anterior Caudate	brain
24	chr2:128063000-128076800	Strong transcription	Osteobl	bone
25	chr2:128063000-128077400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr2:128063000-128078400	Strong transcription	Adipose Nuclei	Adipose
27	chr2:128063000-128080200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr2:128063000-128089200	Strong transcription	Skeletal Muscle Female	skeletal muscle
29	chr2:128063200-128076600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr2:128063200-128080200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr2:128063400-128077800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
32	chr2:128063400-128077800	Strong transcription	Fetal Lung	lung
33	chr2:128063400-128084800	Strong transcription	Primary T helper cells PMA-I stimulated	--
34	chr2:128063400-128098400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr2:128063600-128078000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr2:128063600-128081200	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
37	chr2:128063600-128083400	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
38	chr2:128063600-128091800	Strong transcription	Placenta	Placenta
39	chr2:128063800-128075400	Strong transcription	Stomach Smooth Muscle	stomach
40	chr2:128063800-128077200	Strong transcription	A549	lung
41	chr2:128063800-128077800	Strong transcription	Fetal Muscle Leg	muscle
42	chr2:128063800-128081400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
43	chr2:128063800-128083400	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
44	chr2:128064200-128083800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr2:128064200-128090000	Weak transcription	Psoas Muscle	Psoas
46	chr2:128064600-128078000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
47	chr2:128064800-128077400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
48	chr2:128065000-128100200	Weak transcription	Stomach Mucosa	stomach
49	chr2:128065200-128077800	Strong transcription	Primary neutrophils fromperipheralblood	blood
50	chr2:128066000-128075000	Strong transcription	Primary T helper naive cells from peripheral blood	blood

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