Variant report

Variant	rs13433851
Chromosome Location	chr3:42846725-42846726
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:27)
CpG islands
(count:0)
Chromatin interactive
region (count:4)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:27 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr3:42842603-42847269	HepG2	liver:	n/a	n/a
2	SIN3A	chr3:42844719-42847111	H1-hESC	embryonic stem cell:	n/a	chr3:42846333-42846344
3	MAX	chr3:42846696-42847383	K562	blood:	n/a	n/a
4	MBD4	chr3:42846631-42847335	HepG2	liver:	n/a	n/a
5	POLR2A	chr3:42844342-42846921	PBDE	blood:	n/a	n/a
6	POLR2A	chr3:42841822-42846994	MCF10A-Er-Src	breast:	n/a	n/a
7	TBP	chr3:42844878-42847203	HepG2	liver:	n/a	n/a
8	POLR2A	chr3:42844558-42847298	K562	blood:	n/a	n/a
9	RFX5	chr3:42844181-42847194	SK-N-SH	brain:	n/a	chr3:42845776-42845785 chr3:42846020-42846029
10	POLR2A	chr3:42846717-42846734	MCF-7	breast:	n/a	n/a
11	HEY1	chr3:42844804-42847265	HepG2	liver:	n/a	chr3:42846053-42846068
12	POLR2A	chr3:42844632-42847336	HepG2	liver:	n/a	n/a
13	MYBL2	chr3:42845708-42847512	HepG2	liver:	n/a	n/a
14	POLR2A	chr3:42845199-42847038	K562	blood:	n/a	n/a
15	RCOR1	chr3:42844693-42847124	K562	blood:	n/a	n/a
16	UBTF	chr3:42844559-42847077	K562	blood:	n/a	n/a
17	HEY1	chr3:42846696-42847210	HepG2	liver:	n/a	n/a
18	MAZ	chr3:42844653-42847434	IMR90	lung:	n/a	n/a
19	MAX	chr3:42846656-42847503	HepG2	liver:	n/a	n/a
20	POLR2A	chr3:42844156-42847316	HepG2	liver:	n/a	n/a
21	NRF1	chr3:42845495-42846821	SK-N-SH	brain:	n/a	chr3:42846055-42846066
22	ARID3A	chr3:42846646-42847315	HepG2	liver:	n/a	n/a
23	TEAD4	chr3:42846542-42847356	HepG2	liver:	n/a	n/a
24	MXI1	chr3:42844306-42847361	SK-N-SH	brain:	n/a	n/a
25	POLR2A	chr3:42846655-42847141	HepG2	liver:	n/a	n/a
26	POLR2A	chr3:42843570-42846867	MCF10A-Er-Src	breast:	n/a	n/a
27	YY1	chr3:42846669-42847177	HepG2	liver:	n/a	n/a

No data

(count:4 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr3:42845805..42849029-chr3:42849573..42852164,3	K562	blood:
2	chr3:42824890..42826427-chr3:42846368..42849039,2	K562	blood:
3	chr3:42530826..42532849-chr3:42845908..42847611,2	MCF-7	breast:
4	chr3:42812718..42815694-chr3:42844363..42847706,3	K562	blood:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-HIGD1A-1	chr3:42846696-42847129	ENSG00000235288.1

No data

Variant related genes	Relation type
ENSG00000273291	TF binding region
ENSG00000273328	TF binding region
ACKR2	TF binding region
HIGD1A	TF binding region
KRBOX1	TF binding region
ENSG00000144648	Chromatin interaction
ENSG00000244607	Chromatin interaction
ENSG00000240747	Chromatin interaction
ENSG00000273291	Chromatin interaction
ENSG00000273328	Chromatin interaction
ENSG00000114812	Chromatin interaction

rs_ID	r²[population]
rs13433945	0.85[AFR][1000 genomes]
rs55914160	0.85[AFR][1000 genomes]
rs73829293	0.83[AFR][1000 genomes]
rs9811031	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9831582	0.85[AFR][1000 genomes]
rs9836850	0.85[AFR][1000 genomes]
rs9837432	0.85[AFR][1000 genomes]
rs9849297	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9851661	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9855749	0.85[AFR][1000 genomes]
rs9864269	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9866372	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9877459	0.85[AFR][1000 genomes]
rs9881713	0.85[AFR][1000 genomes]

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:42843600-42846800	Active TSS	Right Ventricle	heart
2	chr3:42844200-42846800	Active TSS	Left Ventricle	heart
3	chr3:42844200-42847000	Active TSS	ES-WA7 Cell Line	embryonic stem cell
4	chr3:42844200-42847000	Active TSS	HSMM	muscle
5	chr3:42844400-42847000	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr3:42844600-42846800	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr3:42844600-42846800	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr3:42844600-42846800	Active TSS	Aorta	Aorta
9	chr3:42844600-42846800	Active TSS	Gastric	stomach
10	chr3:42844600-42847000	Active TSS	Small Intestine	intestine
11	chr3:42844600-42847200	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr3:42844800-42846800	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr3:42844800-42846800	Active TSS	HUES6 Cell Line	embryonic stem cell
14	chr3:42844800-42846800	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr3:42844800-42846800	Active TSS	Ovary	ovary
16	chr3:42844800-42847000	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr3:42844800-42847000	Active TSS	H9 Cell Line	embryonic stem cell
18	chr3:42844800-42847000	Active TSS	A549	lung
19	chr3:42845000-42846800	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr3:42845000-42846800	Active TSS	Fetal Kidney	kidney
21	chr3:42845000-42846800	Active TSS	Pancreas	Pancrea
22	chr3:42845000-42847000	Active TSS	Colon Smooth Muscle	Colon
23	chr3:42845000-42847000	Active TSS	Pancreatic Islets	Pancreatic Islet
24	chr3:42845000-42847200	Active TSS	Duodenum Mucosa	Duodenum
25	chr3:42845200-42847000	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr3:42845200-42847000	Active TSS	Osteobl	bone
27	chr3:42845200-42847200	Active TSS	Brain Hippocampus Middle	brain
28	chr3:42845400-42846800	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr3:42846200-42846800	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
30	chr3:42846200-42846800	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
31	chr3:42846200-42846800	Bivalent/Poised TSS	Fetal Stomach	stomach
32	chr3:42846200-42846800	Active TSS	Right Atrium	heart
33	chr3:42846200-42847000	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
34	chr3:42846200-42847000	Flanking Active TSS	Dnd41	blood
35	chr3:42846200-42847200	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
36	chr3:42846200-42847200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr3:42846200-42847200	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
38	chr3:42846400-42846800	Flanking Bivalent TSS/Enh	HUES64 Cell Line	embryonic stem cell
39	chr3:42846400-42846800	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
40	chr3:42846400-42846800	Flanking Active TSS	Primary T cells from cord blood	blood
41	chr3:42846400-42846800	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
42	chr3:42846400-42846800	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
43	chr3:42846400-42846800	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
44	chr3:42846400-42846800	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
45	chr3:42846400-42846800	Flanking Active TSS	Muscle Satellite Cultured Cells	--
46	chr3:42846400-42846800	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr3:42846400-42846800	Flanking Active TSS	Fetal Heart	heart
48	chr3:42846400-42846800	Flanking Active TSS	Hela-S3	cervix
49	chr3:42846400-42846800	Flanking Active TSS	HSMMtube	muscle
50	chr3:42846400-42846800	Flanking Active TSS	HUVEC	blood vessel

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