Variant report

Variant	rs13433945
Chromosome Location	chr3:42844936-42844937
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAX	chr3:42844856-42846364	ECC-1	luminal epithelium:	n/a	n/a
2	HCFC1	chr3:42844736-42846542	K562	blood:	n/a	n/a
3	POLR2A	chr3:42844704-42846529	H1-neurons	neurons:	n/a	n/a
4	HEY1	chr3:42844560-42846500	HepG2	liver:	n/a	chr3:42846053-42846068
5	POLR2A	chr3:42844540-42846352	GM12878	blood:	n/a	n/a
6	MAX	chr3:42844729-42845459	MCF-7	breast:	n/a	n/a
7	YY1	chr3:42844648-42845108	GM12878	blood:	n/a	n/a
8	POLR2A	chr3:42842603-42847269	HepG2	liver:	n/a	n/a
9	IRF1	chr3:42844400-42846574	K562	blood:	n/a	chr3:42845453-42845462 chr3:42846019-42846028
10	RCOR1	chr3:42844934-42846361	Hela-S3	cervix:	n/a	n/a
11	SIN3A	chr3:42844719-42847111	H1-hESC	embryonic stem cell:	n/a	chr3:42846333-42846344
12	YY1	chr3:42844706-42845350	ECC-1	luminal epithelium:	n/a	n/a
13	ZC3H11A	chr3:42844112-42845469	K562	blood:	n/a	n/a
14	POLR2A	chr3:42844682-42846406	K562	blood:	n/a	n/a
15	TAF1	chr3:42844783-42846421	K562	blood:	n/a	n/a
16	POLR2A	chr3:42844853-42846422	K562	blood:	n/a	n/a
17	MAX	chr3:42844697-42846679	K562	blood:	n/a	n/a
18	POLR2A	chr3:42844342-42846921	PBDE	blood:	n/a	n/a
19	ELF1	chr3:42844756-42845607	K562	blood:	n/a	n/a
20	TAF1	chr3:42844839-42846509	ECC-1	luminal epithelium:	n/a	n/a
21	POLR2A	chr3:42844756-42846315	H1-hESC	embryonic stem cell:	n/a	n/a
22	POLR2A	chr3:42844634-42846519	GM12892	blood:	n/a	n/a
23	POLR2A	chr3:42844836-42846422	K562	blood:	n/a	n/a
24	POLR2A	chr3:42841822-42846994	MCF10A-Er-Src	breast:	n/a	n/a
25	EP300	chr3:42844692-42846652	GM12878	blood:	n/a	chr3:42845030-42845037 chr3:42845122-42845129
26	TBP	chr3:42844878-42847203	HepG2	liver:	n/a	n/a
27	MAX	chr3:42844693-42845078	H1-hESC	embryonic stem cell:	n/a	n/a
28	YY1	chr3:42844598-42846358	K562	blood:	n/a	chr3:42846294-42846303 chr3:42845512-42845523 chr3:42845878-42845887
29	STAT3	chr3:42844287-42844965	MCF10A-Er-Src	breast:	n/a	chr3:42844411-42844419
30	TAF1	chr3:42844669-42846455	H1-hESC	embryonic stem cell:	n/a	n/a
31	POLR2A	chr3:42844558-42847298	K562	blood:	n/a	n/a
32	HCFC1	chr3:42844436-42846538	Hela-S3	cervix:	n/a	n/a
33	POLR2A	chr3:42844823-42845166	GM12878	blood:	n/a	n/a
34	POLR2A	chr3:42844750-42846509	GM18505	blood:	n/a	n/a
35	RFX5	chr3:42844181-42847194	SK-N-SH	brain:	n/a	chr3:42845776-42845785 chr3:42846020-42846029
36	HEY1	chr3:42844461-42846405	K562	blood:	n/a	chr3:42846053-42846068
37	HEY1	chr3:42844804-42847265	HepG2	liver:	n/a	chr3:42846053-42846068
38	POLR2A	chr3:42844559-42846417	H1-hESC	embryonic stem cell:	n/a	n/a
39	POLR2A	chr3:42844544-42846483	GM12878	blood:	n/a	n/a
40	YY1	chr3:42844640-42845155	GM12892	blood:	n/a	n/a
41	YY1	chr3:42844644-42845143	HepG2	liver:	n/a	n/a
42	TEAD4	chr3:42844527-42846495	K562	blood:	n/a	n/a
43	TBP	chr3:42844737-42846385	H1-hESC	embryonic stem cell:	n/a	n/a
44	POLR2A	chr3:42844454-42845507	HepG2	liver:	n/a	n/a
45	REST	chr3:42844629-42846241	H1-neurons	neurons:	n/a	chr3:42845567-42845580
46	GATA1	chr3:42844184-42846502	PBDE	blood:	n/a	chr3:42845335-42845345 chr3:42844375-42844384 chr3:42844377-42844384 chr3:42844370-42844391 chr3:42844372-42844388 chr3:42844375-42844384 chr3:42844372-42844388 chr3:42845454-42845464 chr3:42844374-42844386 chr3:42844377-42844384 chr3:42844375-42844385 chr3:42844377-42844384
47	MXI1	chr3:42844609-42846420	HepG2	liver:	n/a	n/a
48	POLR2A	chr3:42844632-42847336	HepG2	liver:	n/a	n/a
49	E2F6	chr3:42844668-42846394	K562	blood:	n/a	chr3:42846019-42846028 chr3:42845870-42845882
50	NR2F2	chr3:42844707-42845680	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr3:42841845..42845236-chr3:42855285..42858253,3	K562	blood:
2	chr3:42843855..42845411-chr3:42851834..42853689,2	K562	blood:
3	chr3:42843293..42845569-chr3:44276181..44278757,2	K562	blood:
4	chr3:42747563..42749919-chr3:42844077..42845877,2	K562	blood:
5	chr3:42843552..42845487-chr3:42920948..42923647,2	K562	blood:
6	chr3:42841907..42845904-chr3:42858547..42863038,5	K562	blood:
7	chr3:42542919..42545079-chr3:42843283..42845875,2	K562	blood:
8	chr3:42844655..42846546-chr3:42884884..42886933,2	K562	blood:
9	chr3:42820881..42822515-chr3:42843907..42845636,2	K562	blood:
10	chr3:42812718..42815694-chr3:42844363..42847706,3	K562	blood:
11	chr3:42842350..42845554-chr3:42847131..42848922,4	K562	blood:

Variant related genes	Relation type
ACKR2	TF binding region
ENSG00000144648	Chromatin interaction
ENSG00000114812	Chromatin interaction
ENSG00000244607	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs13433851	0.85[AFR][1000 genomes]
rs55914160	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73829292	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73829293	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9814373	0.82[AFR][1000 genomes]
rs9831582	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9836850	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9837432	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9849297	0.82[AFR][1000 genomes]
rs9851661	0.82[AFR][1000 genomes]
rs9855749	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9866372	0.82[AFR][1000 genomes]
rs9877459	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9879906	0.82[AFR][1000 genomes]
rs9881713	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:42843400-42845200	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
2	chr3:42843400-42845400	Flanking Active TSS	Liver	Liver
3	chr3:42843600-42845200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr3:42843600-42845800	Active TSS	Right Atrium	heart
5	chr3:42843600-42846800	Active TSS	Right Ventricle	heart
6	chr3:42844000-42845000	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr3:42844000-42845000	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
8	chr3:42844000-42845000	Flanking Active TSS	Stomach Smooth Muscle	stomach
9	chr3:42844000-42845200	Flanking Active TSS	Dnd41	blood
10	chr3:42844000-42846600	Active TSS	GM12878-XiMat	blood
11	chr3:42844200-42845000	Flanking Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr3:42844200-42845000	Enhancers	Primary monocytes fromperipheralblood	blood
13	chr3:42844200-42845000	Flanking Active TSS	Duodenum Mucosa	Duodenum
14	chr3:42844200-42845000	Flanking Active TSS	Fetal Kidney	kidney
15	chr3:42844200-42845000	Flanking Active TSS	Pancreatic Islets	Pancreatic Islet
16	chr3:42844200-42845000	Flanking Active TSS	Rectal Smooth Muscle	rectum
17	chr3:42844200-42845000	Flanking Active TSS	NHEK	skin
18	chr3:42844200-42845200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr3:42844200-42845200	Flanking Active TSS	NH-A	brain
20	chr3:42844200-42845400	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
21	chr3:42844200-42845400	Flanking Active TSS	Hela-S3	cervix
22	chr3:42844200-42846400	Active TSS	ES-I3 Cell Line	embryonic stem cell
23	chr3:42844200-42846800	Active TSS	Left Ventricle	heart
24	chr3:42844200-42847000	Active TSS	ES-WA7 Cell Line	embryonic stem cell
25	chr3:42844200-42847000	Active TSS	HSMM	muscle
26	chr3:42844400-42845000	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr3:42844400-42845000	Enhancers	Primary B cells from peripheral blood	blood
28	chr3:42844400-42845000	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
29	chr3:42844400-42845000	Flanking Active TSS	Muscle Satellite Cultured Cells	--
30	chr3:42844400-42845000	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr3:42844400-42845000	Flanking Active TSS	Brain Cingulate Gyrus	brain
32	chr3:42844400-42845000	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
33	chr3:42844400-42845000	Flanking Active TSS	Fetal Stomach	stomach
34	chr3:42844400-42845200	Flanking Active TSS	Osteobl	bone
35	chr3:42844400-42845400	Flanking Active TSS	Primary B cells from cord blood	blood
36	chr3:42844400-42845400	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr3:42844400-42845400	Flanking Active TSS	HUVEC	blood vessel
38	chr3:42844400-42845600	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
39	chr3:42844400-42846200	Active TSS	H1 Cell Line	embryonic stem cell
40	chr3:42844400-42846400	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
41	chr3:42844400-42846400	Active TSS	K562	blood
42	chr3:42844400-42846600	Active TSS	Psoas Muscle	Psoas
43	chr3:42844400-42846600	Active TSS	Stomach Mucosa	stomach
44	chr3:42844400-42847000	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
45	chr3:42844600-42845000	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
46	chr3:42844600-42845000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
47	chr3:42844600-42845000	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
48	chr3:42844600-42845000	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
49	chr3:42844600-42845000	Flanking Active TSS	Brain Anterior Caudate	brain
50	chr3:42844600-42845000	Flanking Active TSS	Brain Germinal Matrix	brain

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