Variant report

Variant	rs13436230
Chromosome Location	chr5:91898417-91898418
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RAD21	chr5:91898417-91898603	Hela-S3	cervix:	n/a	n/a

Variant related genes	Relation type
ENSG00000249776	TF binding region

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10064328	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10077094	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10077943	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10079736	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10476525	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10514353	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12171504	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12171509	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13354460	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13436000	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17082132	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1910060	1.00[EUR][1000 genomes]
rs55867531	1.00[EUR][1000 genomes]
rs56069666	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56213708	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58984559	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60867003	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6861650	1.00[EUR][1000 genomes]
rs6867083	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6892010	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6893562	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs73773974	1.00[EUR][1000 genomes]
rs73773983	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9314098	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:91894000-91900000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr5:91894600-91898800	Enhancers	Muscle Satellite Cultured Cells	--
3	chr5:91894600-91899000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr5:91895000-91898800	Enhancers	NHDF-Ad	bronchial
5	chr5:91896600-91898600	Enhancers	Brain Germinal Matrix	brain
6	chr5:91897000-91898600	Enhancers	Hela-S3	cervix
7	chr5:91897400-91898600	Flanking Active TSS	A549	lung
8	chr5:91897600-91898600	Weak transcription	Fetal Kidney	kidney
9	chr5:91898000-91901400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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