Variant report

Variant	rs13436850
Chromosome Location	chr5:145027535-145027536
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10036664	1.00[AMR][1000 genomes]
rs10040204	1.00[AMR][1000 genomes]
rs10043538	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10043961	1.00[AMR][1000 genomes]
rs10052024	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10052169	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10054314	1.00[AMR][1000 genomes]
rs10073313	1.00[AMR][1000 genomes]
rs10077242	1.00[AMR][1000 genomes]
rs10476875	1.00[AMR][1000 genomes]
rs13354398	1.00[AMR][1000 genomes]
rs13356403	1.00[AMR][1000 genomes]
rs13436791	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2217647	1.00[AMR][1000 genomes]
rs28507009	1.00[AMR][1000 genomes]
rs4345360	1.00[AMR][1000 genomes]
rs73302023	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs868778	1.00[AMR][1000 genomes]
rs9285664	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv883004	chr5:144945649-145068001	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv883005	chr5:144945649-145107586	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv275206	chr5:145016621-145036932	Enhancers Strong transcription Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:145026400-145027600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr5:145026400-145027600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr5:145026400-145027600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr5:145026600-145027600	Strong transcription	Fetal Intestine Small	intestine
5	chr5:145026600-145027800	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr5:145026800-145041000	Weak transcription	Ovary	ovary
7	chr5:145027000-145027600	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr5:145027000-145027600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr5:145027400-145027600	Enhancers	HUES6 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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