Variant report

Variant	rs13438929
Chromosome Location	chr8:10906308-10906309
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:10887222..10889685-chr8:10905766..10908616,2	K562	blood:
2	chr8:10905368..10906915-chr8:10917694..10919634,2	K562	blood:
3	chr8:10886694..10889685-chr8:10905766..10907458,2	K562	blood:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10102241	0.87[EUR][1000 genomes]
rs10111872	0.83[EUR][1000 genomes]
rs6601548	0.87[EUR][1000 genomes]
rs6601549	0.87[EUR][1000 genomes]
rs6996735	0.83[EUR][1000 genomes]
rs7015045	0.87[EUR][1000 genomes]
rs7826139	0.82[EUR][1000 genomes]
rs7838655	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035072	chr8:10819444-11480692	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv539473	chr8:10819444-11480692	Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv1022434	chr8:10866242-10916523	Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:10889800-10910800	Weak transcription	HSMMtube	muscle
2	chr8:10904800-10906600	Enhancers	Primary T helper cells fromperipheralblood	blood
3	chr8:10904800-10907400	Enhancers	iPS-20b Cell Line	embryonic stem cell
4	chr8:10905000-10906400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
5	chr8:10905000-10906600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
6	chr8:10905000-10908000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr8:10905000-10908400	Enhancers	H1 Cell Line	embryonic stem cell
8	chr8:10905200-10907400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr8:10905200-10907400	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr8:10905200-10907400	Enhancers	iPS-15b Cell Line	embryonic stem cell
11	chr8:10905200-10907600	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr8:10905400-10906400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr8:10905400-10906600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr8:10905400-10906800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr8:10905400-10907000	Enhancers	Fetal Thymus	thymus
16	chr8:10905400-10907400	Enhancers	HUES48 Cell Line	embryonic stem cell
17	chr8:10905400-10907400	Enhancers	iPS-18 Cell Line	embryonic stem cell
18	chr8:10905400-10907800	Enhancers	Primary neutrophils fromperipheralblood	blood
19	chr8:10905400-10908400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr8:10905600-10906400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
21	chr8:10905600-10906400	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr8:10905600-10906400	Enhancers	Lung	lung
23	chr8:10905600-10906600	Bivalent Enhancer	Fetal Muscle Trunk	muscle
24	chr8:10905600-10906600	Enhancers	Right Ventricle	heart
25	chr8:10905600-10907000	Enhancers	Fetal Heart	heart
26	chr8:10905600-10909000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
27	chr8:10905800-10906400	Enhancers	Primary T cells fromperipheralblood	blood
28	chr8:10905800-10906600	Bivalent Enhancer	Fetal Brain Female	brain
29	chr8:10905800-10907000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr8:10906000-10906400	Weak transcription	H9 Cell Line	embryonic stem cell
31	chr8:10906000-10906400	Enhancers	Primary T killer memory cells from peripheral blood	blood
32	chr8:10906000-10906600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr8:10906000-10906800	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
34	chr8:10906000-10907600	Enhancers	ES-I3 Cell Line	embryonic stem cell
35	chr8:10906200-10906600	Enhancers	Spleen	Spleen
36	chr8:10906200-10907600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
37	chr8:10906200-10907800	Enhancers	Breast Myoepithelial Primary Cells	Breast
38	chr8:10906200-10908000	Enhancers	ES-WA7 Cell Line	embryonic stem cell

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