Variant report

Variant	rs13439208
Chromosome Location	chr8:63459135-63459136
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10090181	1.00[AMR][1000 genomes]
rs10092099	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10092296	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10092935	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10094032	1.00[AMR][1000 genomes]
rs10095868	1.00[AMR][1000 genomes]
rs10096226	1.00[AMR][1000 genomes]
rs10100399	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10101425	1.00[AMR][1000 genomes]
rs10101617	1.00[AMR][1000 genomes]
rs10104556	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10957230	1.00[AMR][1000 genomes]
rs13438922	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13439077	0.90[AFR][1000 genomes]
rs13439470	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16928916	1.00[AMR][1000 genomes]
rs16929105	1.00[ASN][1000 genomes]
rs28392810	1.00[AMR][1000 genomes]
rs28407937	1.00[AMR][1000 genomes]
rs28448523	1.00[ASN][1000 genomes]
rs28451590	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28485927	1.00[ASN][1000 genomes]
rs28544494	1.00[ASN][1000 genomes]
rs28547361	1.00[ASN][1000 genomes]
rs28564421	1.00[ASN][1000 genomes]
rs28570147	1.00[AMR][1000 genomes]
rs28639415	1.00[AMR][1000 genomes]
rs28645735	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28647803	1.00[ASN][1000 genomes]
rs28666681	1.00[AMR][1000 genomes]
rs28713340	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28714560	1.00[AMR][1000 genomes]
rs28728121	1.00[AMR][1000 genomes]
rs28728294	1.00[ASN][1000 genomes]
rs28735390	1.00[AMR][1000 genomes]
rs2928389	0.84[AFR][1000 genomes]
rs56200385	1.00[ASN][1000 genomes]
rs6472041	1.00[AMR][1000 genomes]
rs6981632	1.00[ASN][1000 genomes]
rs6988031	1.00[AMR][1000 genomes]
rs6992264	1.00[AMR][1000 genomes]
rs7001999	1.00[ASN][1000 genomes]
rs7821718	1.00[AMR][1000 genomes]
rs7823118	1.00[AMR][1000 genomes]
rs7837461	1.00[AMR][1000 genomes]
rs7838713	0.97[AFR][1000 genomes]
rs827700	0.81[AFR][1000 genomes]
rs9657077	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018879	chr8:63281724-63937632	Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv831339	chr8:63312449-63501127	Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv890959	chr8:63449156-63515522	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv2761431	chr8:63458672-63467199	Weak transcription Enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:63458200-63459800	Enhancers	Fetal Brain Female	brain
2	chr8:63458600-63460200	Enhancers	Fetal Brain Male	brain
3	chr8:63458800-63459200	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr8:63458800-63459400	Enhancers	Brain Angular Gyrus	brain
5	chr8:63458800-63459600	Enhancers	Brain Cingulate Gyrus	brain
6	chr8:63458800-63460400	Enhancers	Brain Germinal Matrix	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links