Variant report

Variant	rs1345538
Chromosome Location	chr12:51280416-51280417
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs1096033	0.86[EUR][1000 genomes]
rs1109726	1.00[ASN][1000 genomes]
rs11609941	1.00[ASN][1000 genomes]
rs1421435	0.87[EUR][1000 genomes]
rs2160979	0.85[EUR][1000 genomes]
rs2243560	0.86[EUR][1000 genomes]
rs2250751	1.00[ASN][1000 genomes]
rs2250752	1.00[ASN][1000 genomes]
rs2251024	1.00[ASN][1000 genomes]
rs2251603	1.00[ASN][1000 genomes]
rs2252589	1.00[ASN][1000 genomes]
rs2359005	0.81[EUR][1000 genomes]
rs2359006	0.81[EUR][1000 genomes]
rs2554853	0.89[EUR][1000 genomes]
rs2554862	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2684889	1.00[ASN][1000 genomes]
rs2684898	1.00[ASN][1000 genomes]
rs2684901	1.00[ASN][1000 genomes]
rs2700482	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2700485	1.00[ASN][1000 genomes]
rs2731434	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2731439	1.00[ASN][1000 genomes]
rs2731440	1.00[ASN][1000 genomes]
rs2731442	1.00[ASN][1000 genomes]
rs2731443	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs4638364	0.85[EUR][1000 genomes]
rs4768868	0.88[EUR][1000 genomes]
rs4768931	0.85[EUR][1000 genomes]
rs57602501	1.00[ASN][1000 genomes]
rs57729468	1.00[ASN][1000 genomes]
rs6580769	1.00[ASN][1000 genomes]
rs66838741	1.00[ASN][1000 genomes]
rs66947035	1.00[ASN][1000 genomes]
rs67356137	1.00[ASN][1000 genomes]
rs67934435	1.00[ASN][1000 genomes]
rs7137881	0.88[EUR][1000 genomes]
rs7303452	0.88[EUR][1000 genomes]
rs7307788	1.00[ASN][1000 genomes]
rs7311916	0.81[EUR][1000 genomes]
rs7960015	1.00[ASN][1000 genomes]
rs7968440	1.00[ASN][1000 genomes]
rs7976942	1.00[ASN][1000 genomes]
rs7977064	1.00[ASN][1000 genomes]
rs7977690	1.00[ASN][1000 genomes]
rs7977742	1.00[CHB][hapmap]
rs7978559	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7979165	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs829112	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs829114	1.00[ASN][1000 genomes]
rs829115	1.00[ASN][1000 genomes]
rs829140	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs861204	1.00[CHB][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs865489	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3414501	chr12:51174503-51534707	Strong transcription Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv899078	chr12:51213433-51286750	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1345538	ATF1	cis	Whole Blood	GTEx

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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