Variant report

Variant	rs1346786
Chromosome Location	chr2:56108333-56108334
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:56104196..56106215-chr2:56107692..56109450,2	K562	blood:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs3791675	0.83[CEU][hapmap]
rs3791679	0.83[CEU][hapmap]
rs9753383	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531374	chr2:55653723-56299784	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	56 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:56089200-56112200	Weak transcription	Pancreas	Pancrea
2	chr2:56092400-56111600	Genic enhancers	HUVEC	blood vessel
3	chr2:56092800-56112400	Weak transcription	Stomach Smooth Muscle	stomach
4	chr2:56092800-56114400	Weak transcription	Brain Cingulate Gyrus	brain
5	chr2:56093800-56109000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
6	chr2:56094800-56116200	Weak transcription	Spleen	Spleen
7	chr2:56095600-56109600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr2:56097000-56108800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr2:56103400-56110000	Weak transcription	A549	lung
10	chr2:56103800-56109400	Strong transcription	HSMM	muscle
11	chr2:56104600-56115000	Weak transcription	Skeletal Muscle Female	skeletal muscle
12	chr2:56104800-56109000	Genic enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr2:56104800-56109000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr2:56105000-56110400	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr2:56105000-56112600	Weak transcription	HSMMtube	muscle
16	chr2:56105800-56109200	Strong transcription	NHEK	skin
17	chr2:56106000-56108400	Strong transcription	Ovary	ovary
18	chr2:56106200-56108400	Genic enhancers	Aorta	Aorta
19	chr2:56106400-56109000	Strong transcription	HMEC	breast
20	chr2:56106600-56108800	Strong transcription	NH-A	brain
21	chr2:56106800-56108400	Strong transcription	Fetal Kidney	kidney
22	chr2:56106800-56108400	Enhancers	Hela-S3	cervix
23	chr2:56106800-56108600	Genic enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr2:56107000-56108400	Genic enhancers	NHLF	lung
25	chr2:56107000-56109000	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr2:56107000-56109000	Genic enhancers	Osteobl	bone
27	chr2:56107400-56108400	Genic enhancers	Adipose Nuclei	Adipose
28	chr2:56107600-56108400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr2:56107600-56108400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
30	chr2:56107600-56108400	Genic enhancers	Lung	lung
31	chr2:56107600-56108400	Enhancers	NHDF-Ad	bronchial
32	chr2:56107600-56108600	Enhancers	Placenta	Placenta
33	chr2:56107600-56108800	Strong transcription	Fetal Stomach	stomach
34	chr2:56107600-56108800	Enhancers	Gastric	stomach
35	chr2:56107600-56108800	Enhancers	Right Atrium	heart
36	chr2:56107600-56114400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr2:56107800-56108400	Enhancers	Brain Substantia Nigra	brain
38	chr2:56107800-56108800	Enhancers	Brain Anterior Caudate	brain
39	chr2:56107800-56110800	Weak transcription	Fetal Lung	lung
40	chr2:56107800-56111400	Weak transcription	Monocytes-CD14+_RO01746	blood
41	chr2:56107800-56116000	Weak transcription	Placenta Amnion	Placenta Amnion
42	chr2:56108200-56108400	Genic enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr2:56108200-56109200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr2:56108200-56110400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr2:56108200-56110600	Weak transcription	Primary monocytes fromperipheralblood	blood
46	chr2:56108200-56112800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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