Variant report

Variant	rs1348305
Chromosome Location	chr11:57142963-57142964
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11228935	1.00[AMR][1000 genomes]
rs12281313	1.00[AMR][1000 genomes]
rs12286248	1.00[AMR][1000 genomes]
rs12288876	1.00[AMR][1000 genomes]
rs12290010	1.00[AMR][1000 genomes]
rs2581926	1.00[AMR][1000 genomes]
rs576531	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044030	chr11:57073395-58035564	Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	136 gene(s)	inside rSNPs	diseases
2	nsv541047	chr11:57073395-58035564	Active TSS Enhancers Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	136 gene(s)	inside rSNPs	diseases
3	nsv530621	chr11:57139699-57703639	Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Weak transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	109 gene(s)	inside rSNPs	diseases
4	esv3488807	chr11:57142926-57145224	Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:57138800-57144200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr11:57139000-57143200	Weak transcription	Fetal Muscle Trunk	muscle
3	chr11:57139200-57143000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr11:57142600-57143000	Enhancers	Fetal Brain Female	brain
5	chr11:57142600-57143600	Enhancers	A549	lung
6	chr11:57142800-57143000	Bivalent Enhancer	Fetal Brain Male	brain
7	chr11:57142800-57143400	Enhancers	Right Ventricle	heart
8	chr11:57142800-57143600	Enhancers	Fetal Muscle Leg	muscle
9	chr11:57142800-57143800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr11:57142800-57144400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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