Variant report

Variant	rs1349273
Chromosome Location	chr3:22531603-22531604
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11129071	0.81[CHB][hapmap];0.91[JPT][hapmap];0.90[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1349271	0.91[CHB][hapmap];0.95[JPT][hapmap]
rs1349272	0.86[CHB][hapmap];0.91[JPT][hapmap]
rs1349274	0.86[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1375820	0.87[CHB][hapmap];0.91[JPT][hapmap];0.80[YRI][hapmap]
rs1375821	0.90[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1449898	0.86[CHB][hapmap];0.91[JPT][hapmap]
rs1449899	0.86[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs1449900	0.87[CHB][hapmap];0.91[JPT][hapmap];0.81[YRI][hapmap];0.89[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs1579985	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2122369	0.86[CHB][hapmap];0.91[JPT][hapmap];0.95[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs2122370	0.86[CHB][hapmap];0.91[JPT][hapmap];0.95[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs2358688	0.86[CHB][hapmap];0.91[JPT][hapmap]
rs3849563	0.87[CHB][hapmap];0.91[JPT][hapmap];0.81[YRI][hapmap];0.94[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs6802448	0.91[CHB][hapmap];0.95[JPT][hapmap]
rs753989	0.91[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs7628194	0.94[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs9819272	0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003211	chr3:22244883-22584229	Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv536520	chr3:22244883-22584229	Enhancers Bivalent/Poised TSS Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv428082	chr3:22397625-22539817	Weak transcription Bivalent/Poised TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv834634	chr3:22420053-22574021	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv876623	chr3:22473729-22571896	Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:22531200-22532600	Weak transcription	Pancreatic Islets	Pancreatic Islet

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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