Variant report

Variant	rs1351367
Chromosome Location	chr8:63516587-63516588
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11786076	0.83[ASN][1000 genomes]
rs12155831	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17835036	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17835066	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs34122427	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35489938	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4268119	0.81[ASN][1000 genomes]
rs56121078	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6991837	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7007264	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018879	chr8:63281724-63937632	Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv831340	chr8:63515126-63702660	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:63515000-63518000	Enhancers	Fetal Lung	lung
2	chr8:63515600-63517000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr8:63516000-63516800	Enhancers	Fetal Stomach	stomach
4	chr8:63516000-63519200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr8:63516200-63516800	Weak transcription	Fetal Brain Female	brain
6	chr8:63516200-63516800	Enhancers	Fetal Kidney	kidney
7	chr8:63516200-63517000	Enhancers	H1 Cell Line	embryonic stem cell
8	chr8:63516200-63517000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr8:63516200-63517000	Enhancers	H9 Cell Line	embryonic stem cell
10	chr8:63516200-63517000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr8:63516200-63517000	Enhancers	HUES48 Cell Line	embryonic stem cell
12	chr8:63516200-63517000	Enhancers	HUES6 Cell Line	embryonic stem cell
13	chr8:63516200-63517000	Enhancers	iPS-15b Cell Line	embryonic stem cell
14	chr8:63516200-63517000	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
15	chr8:63516200-63517000	Enhancers	iPS-20b Cell Line	embryonic stem cell
16	chr8:63516200-63517200	Enhancers	HUES64 Cell Line	embryonic stem cell
17	chr8:63516400-63516800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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