Variant report

Variant	rs1352056
Chromosome Location	chr4:175653824-175653825
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:175644373..175645949-chr4:175653690..175656140,2	K562	blood:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10000984	0.81[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap]
rs10004534	0.81[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs10007273	0.81[CHB][hapmap]
rs10009999	1.00[CHB][hapmap];0.84[JPT][hapmap]
rs10011025	0.91[CHB][hapmap];0.86[JPT][hapmap]
rs10013656	0.96[CEU][hapmap];0.90[CHB][hapmap];0.86[JPT][hapmap]
rs10020688	0.80[ASN][1000 genomes]
rs10213085	0.82[ASN][1000 genomes]
rs10471163	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs10520290	0.81[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs11725853	0.80[CHB][hapmap];0.94[JPT][hapmap];0.90[ASN][1000 genomes]
rs11737591	0.81[ASN][1000 genomes]
rs12499257	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12504255	0.81[CHB][hapmap];1.00[JPT][hapmap]
rs12509326	1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs12509729	0.89[JPT][hapmap]
rs13142152	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs1485939	0.81[CHB][hapmap];0.82[JPT][hapmap]
rs1485941	0.81[JPT][hapmap]
rs1564939	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs1586338	0.81[CHB][hapmap];0.82[JPT][hapmap]
rs1586339	0.81[ASN][1000 genomes]
rs17060785	0.86[ASN][1000 genomes]
rs28408827	0.81[ASN][1000 genomes]
rs28538678	0.83[ASN][1000 genomes]
rs28688380	0.85[ASN][1000 genomes]
rs2877828	0.86[ASN][1000 genomes]
rs35706713	0.83[ASN][1000 genomes]
rs4447833	0.86[ASN][1000 genomes]
rs4594702	0.81[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs6853281	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs7656851	0.91[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7658547	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7685854	0.80[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs9312559	0.91[CHB][hapmap];0.81[JPT][hapmap]
rs9884969	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869116	chr4:175231090-175801761	Flanking Active TSS Enhancers Genic enhancers Weak transcription Bivalent/Poised TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1018390	chr4:175475505-175969742	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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