Variant report

Variant	rs1354182
Chromosome Location	chr5:15949793-15949794
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:15946299..15948949-chr5:15949742..15951432,2	MCF-7	breast:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs982484	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830216	chr5:15860662-16060420	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region miRNA	4 gene(s)	inside rSNPs	diseases
2	nsv427712	chr5:15883439-16055856	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region miRNA	4 gene(s)	inside rSNPs	diseases
3	nsv4735	chr5:15916346-15961432	Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:15928800-15951400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr5:15934000-15950800	Weak transcription	Brain Substantia Nigra	brain
3	chr5:15936800-15954600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr5:15938200-15950800	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr5:15938400-15958000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr5:15939200-15949800	Weak transcription	Dnd41	blood
7	chr5:15939200-15950800	Weak transcription	Stomach Smooth Muscle	stomach
8	chr5:15939200-15951000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr5:15939200-15951000	Weak transcription	Brain Hippocampus Middle	brain
10	chr5:15939600-15953600	Weak transcription	Ovary	ovary
11	chr5:15939600-15956400	Weak transcription	HSMM	muscle
12	chr5:15940000-15959000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr5:15940200-15952400	Weak transcription	HUVEC	blood vessel
14	chr5:15941000-15950800	Weak transcription	Colon Smooth Muscle	Colon
15	chr5:15941600-15953600	Weak transcription	Adipose Nuclei	Adipose
16	chr5:15942200-15950200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
17	chr5:15942200-15955600	Weak transcription	HSMMtube	muscle
18	chr5:15942200-15957800	Weak transcription	Cortex derived primary cultured neurospheres	brain
19	chr5:15942800-15955400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr5:15943600-15954600	Weak transcription	Aorta	Aorta
21	chr5:15943800-15951800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr5:15944000-15954600	Weak transcription	Left Ventricle	heart
23	chr5:15944000-15955200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr5:15944400-15951200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr5:15945000-15955400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr5:15946000-15950400	Weak transcription	Fetal Stomach	stomach
27	chr5:15948400-15953400	Weak transcription	Fetal Lung	lung
28	chr5:15948800-15951400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
29	chr5:15948800-15953600	Weak transcription	Fetal Heart	heart
30	chr5:15949000-15950000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr5:15949000-15952200	Strong transcription	Fetal Muscle Trunk	muscle
32	chr5:15949600-15950200	Weak transcription	Fetal Muscle Leg	muscle

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