Variant report

Variant	rs1356778
Chromosome Location	chr2:76906648-76906649
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10192558	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10200151	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11126549	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12472875	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12620666	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13392417	0.81[AMR][1000 genomes]
rs13405804	0.81[AMR][1000 genomes]
rs1519987	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1519988	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2203926	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4572615	0.82[AMR][1000 genomes]
rs7580730	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv582235	chr2:76881210-76997763	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv1006275	chr2:76885103-76929056	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv1002822	chr2:76885103-76940701	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv1010119	chr2:76904730-76949552	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:76904800-76907200	Enhancers	Fetal Brain Male	brain
2	chr2:76905000-76908000	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr2:76905600-76907600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr2:76906000-76926600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr2:76906400-76907200	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr2:76906600-76907600	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr2:76906600-76907600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr2:76906600-76907800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr2:76906600-76907800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr2:76906600-76913600	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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