Variant report

Variant	rs1357140
Chromosome Location	chr2:213039917-213039918
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10189769	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11889311	0.95[CEU][hapmap];0.92[CHB][hapmap];0.92[JPT][hapmap];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12470342	1.00[JPT][hapmap]
rs12621602	0.81[CHB][hapmap];1.00[JPT][hapmap]
rs1357141	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1402766	0.82[YRI][hapmap]
rs1464449	0.95[YRI][hapmap]
rs1521648	0.90[AFR][1000 genomes]
rs16847823	1.00[JPT][hapmap]
rs17344783	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62182564	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6736654	0.82[YRI][hapmap]
rs7594859	0.82[YRI][hapmap]
rs939664	0.95[YRI][hapmap];0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011572	chr2:212840066-213152279	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv875805	chr2:212891401-213164837	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv875806	chr2:212997024-213211067	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:213037800-213041200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr2:213038200-213040000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr2:213039000-213040000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr2:213039200-213040000	Weak transcription	Brain Substantia Nigra	brain
5	chr2:213039200-213040400	Weak transcription	Fetal Heart	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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