Variant report

Variant	rs1358339
Chromosome Location	chr7:80359483-80359484
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:80357601..80359638-chr7:80366239..80368776,2	MCF-7	breast:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10499863	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10808255	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11770916	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12670520	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1358338	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1405746	0.88[AFR][1000 genomes]
rs1527466	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1527469	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1527471	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1527473	1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1527474	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1609151	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1609152	0.90[AFR][1000 genomes]
rs1852539	0.87[AFR][1000 genomes]
rs1918371	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1918372	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1918373	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1918374	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1918375	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1949970	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1949971	1.00[MEX][hapmap]
rs2222713	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2366858	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2886791	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3211892	1.00[MEX][hapmap]
rs41486545	1.00[MEX][hapmap]
rs6467337	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6467363	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6467371	0.80[YRI][hapmap];0.81[AFR][1000 genomes]
rs6958853	1.00[AMR][1000 genomes]
rs6958863	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6963015	0.96[AFR][1000 genomes]
rs6969280	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9641897	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv888524	chr7:80107798-80723062	Active TSS Strong transcription Enhancers Genic enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:80354800-80360200	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr7:80355000-80360600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr7:80355400-80365800	Weak transcription	HSMM	muscle
4	chr7:80355800-80360200	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr7:80355800-80360400	Weak transcription	Monocytes-CD14+_RO01746	blood
6	chr7:80356200-80360400	Weak transcription	Primary monocytes fromperipheralblood	blood
7	chr7:80358000-80359600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr7:80358400-80359600	Enhancers	Fetal Muscle Leg	muscle
9	chr7:80358400-80359600	Enhancers	Fetal Stomach	stomach
10	chr7:80358600-80359600	Enhancers	Fetal Lung	lung
11	chr7:80358600-80359600	Enhancers	Rectal Smooth Muscle	rectum
12	chr7:80359000-80359600	Enhancers	A549	lung
13	chr7:80359200-80369000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr7:80359400-80359600	Enhancers	NHDF-Ad	bronchial
15	chr7:80359400-80359800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr7:80359400-80365800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
17	chr7:80359400-80369600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr7:80359400-80370200	Weak transcription	NHLF	lung
19	chr7:80359400-80378000	Weak transcription	Psoas Muscle	Psoas

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