Variant report
| Variant | rs1361449 |
|---|---|
| Chromosome Location | chr6:102332863-102332864 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:102332291..102334019-chr6:102343556..102346119,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:12)
| rs_ID | r2[population] |
|---|---|
| rs1417180 | 0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1556995 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap] |
| rs1610028 | 0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs1610029 | 0.89[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs2153445 | 0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap] |
| rs2791842 | 1.00[JPT][hapmap] |
| rs2895459 | 0.94[CEU][hapmap];1.00[CHB][hapmap];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs6933956 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap] |
| rs9390790 | 0.85[YRI][hapmap] |
| rs9390791 | 0.94[CEU][hapmap];1.00[CHB][hapmap];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs9404155 | 0.88[YRI][hapmap] |
| rs9498729 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap] |
Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1032499 | chr6:102069885-102720998 | Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 2 | nsv830743 | chr6:102284082-102459192 | Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 3 | nsv463994 | chr6:102303080-102346746 | Enhancers Active TSS Flanking Active TSS Weak transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 4 | nsv604318 | chr6:102303080-102346746 | Enhancers Active TSS Weak transcription Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 5 | nsv604319 | chr6:102307069-102355867 | Enhancers Weak transcription Flanking Active TSS Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 6 | nsv604320 | chr6:102310726-102350747 | Enhancers Weak transcription Active TSS Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 7 | nsv886465 | chr6:102318339-102466397 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 8 | nsv886466 | chr6:102327303-102432398 | Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats | TF binding regionChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:102331400-102333200 | Enhancers | Muscle Satellite Cultured Cells | -- |
| 2 | chr6:102332000-102333000 | Weak transcription | Foreskin Melanocyte Primary Cells skin03 | Skin |
