Variant report

Variant	rs1363586
Chromosome Location	chr5:97848808-97848809
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs17166233	1.00[AMR][1000 genomes]
rs1810085	1.00[AMR][1000 genomes]
rs60355504	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73145707	1.00[AMR][1000 genomes]
rs73149514	1.00[AMR][1000 genomes]
rs73157367	1.00[AMR][1000 genomes]
rs73159238	1.00[AMR][1000 genomes]
rs73159250	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018555	chr5:97719032-97873906	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv882412	chr5:97796120-97953719	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:97844400-97850400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr5:97845800-97853600	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr5:97846000-97849200	Weak transcription	Small Intestine	intestine
4	chr5:97846000-97857600	Weak transcription	Pancreas	Pancrea
5	chr5:97846000-97859000	Weak transcription	Gastric	stomach
6	chr5:97846200-97849200	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr5:97846200-97849200	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr5:97846200-97849200	Weak transcription	HSMMtube	muscle
9	chr5:97846200-97849400	Weak transcription	NHDF-Ad	bronchial
10	chr5:97846400-97849000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr5:97846400-97849000	Weak transcription	HSMM	muscle
12	chr5:97846400-97849200	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr5:97846400-97850200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr5:97846600-97852600	Weak transcription	Duodenum Mucosa	Duodenum
15	chr5:97846600-97853400	Weak transcription	Brain Substantia Nigra	brain
16	chr5:97846800-97849000	Weak transcription	Fetal Intestine Small	intestine
17	chr5:97846800-97852600	Weak transcription	Rectal Mucosa Donor 31	rectum
18	chr5:97846800-97853400	Weak transcription	Cortex derived primary cultured neurospheres	brain
19	chr5:97847200-97849200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr5:97847200-97853600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr5:97847600-97849200	Weak transcription	Stomach Mucosa	stomach
22	chr5:97847800-97849200	Weak transcription	Fetal Muscle Leg	muscle
23	chr5:97848000-97849600	Enhancers	Fetal Intestine Large	intestine
24	chr5:97848400-97849200	Enhancers	Fetal Brain Female	brain
25	chr5:97848600-97849600	Enhancers	Brain Germinal Matrix	brain
26	chr5:97848600-97849800	Enhancers	iPS-20b Cell Line	embryonic stem cell
27	chr5:97848800-97849400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
28	chr5:97848800-97849600	Enhancers	ES-I3 Cell Line	embryonic stem cell
29	chr5:97848800-97849600	Enhancers	iPS-15b Cell Line	embryonic stem cell
30	chr5:97848800-97849800	Enhancers	HUES6 Cell Line	embryonic stem cell
31	chr5:97848800-97849800	Enhancers	Fetal Brain Male	brain
32	chr5:97848800-97850400	Enhancers	iPS-18 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links