Variant report

Variant	rs1364918
Chromosome Location	chr4:143441017-143441018
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:143438526..143441082-chr4:143443050..143445665,2	MCF-7	breast:
2	chr4:143391320..143397090-chr4:143436268..143441588,7	MCF-7	breast:
3	chr4:143439527..143441800-chr4:143442238..143444041,2	MCF-7	breast:
4	chr4:143389462..143399452-chr4:143428707..143442488,28	MCF-7	breast:

Variant related genes	Relation type
ENSG00000109452	Chromatin interaction

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10012476	0.87[CEU][hapmap];0.89[YRI][hapmap];0.83[AMR][1000 genomes]
rs10015184	0.82[AMR][1000 genomes]
rs1013397	0.87[CEU][hapmap];0.88[YRI][hapmap];0.80[AMR][1000 genomes]
rs12642500	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12643136	1.00[CEU][hapmap];0.89[YRI][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12644565	0.85[CEU][hapmap]
rs12646243	1.00[CEU][hapmap];0.94[YRI][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12649139	1.00[CEU][hapmap];0.89[YRI][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1364917	1.00[CEU][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1364919	1.00[CEU][hapmap];0.88[YRI][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1364920	1.00[CEU][hapmap];0.94[YRI][hapmap];0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1364926	1.00[CEU][hapmap];0.89[YRI][hapmap];0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1425534	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1425535	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1425538	1.00[CEU][hapmap];0.94[YRI][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17016170	0.87[CEU][hapmap];0.89[YRI][hapmap];0.80[AMR][1000 genomes]
rs17016207	1.00[CEU][hapmap];0.94[YRI][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17016248	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17016284	0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17016304	1.00[CEU][hapmap];0.88[YRI][hapmap];0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2042644	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2113997	0.82[ASN][1000 genomes]
rs2162108	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2322705	0.87[CEU][hapmap];0.80[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs2322706	0.83[AMR][1000 genomes]
rs2322796	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28510314	0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28823374	0.80[AMR][1000 genomes]
rs28850298	0.80[AMR][1000 genomes]
rs28861843	0.83[AMR][1000 genomes]
rs34900920	0.80[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs3913164	0.87[CEU][hapmap]
rs4345256	0.87[CEU][hapmap];0.81[ASN][1000 genomes]
rs57724540	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs59784151	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs60004938	0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6823362	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7668133	0.87[CEU][hapmap]
rs7695918	0.86[CEU][hapmap]
rs7699408	0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9308152	0.87[CEU][hapmap];0.88[YRI][hapmap];0.82[AMR][1000 genomes]
rs979511	0.87[CEU][hapmap]
rs9986090	0.87[CEU][hapmap];0.83[YRI][hapmap];0.80[AMR][1000 genomes]
rs9998089	0.80[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498005	chr4:142515689-143502988	Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv461660	chr4:143437219-143538179	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv595605	chr4:143437219-143538179	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:143428800-143453000	Weak transcription	Primary hematopoietic stem cells	blood
2	chr4:143438600-143443600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr4:143438800-143443600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr4:143438800-143444000	Weak transcription	HMEC	breast
5	chr4:143438800-143462800	Weak transcription	Aorta	Aorta
6	chr4:143439000-143452200	Weak transcription	Fetal Heart	heart
7	chr4:143440800-143443800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr4:143441000-143443600	Weak transcription	NHEK	skin

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