Variant report

Variant	rs1364922
Chromosome Location	chr4:143531693-143531694
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:143388945..143399475-chr4:143525396..143540220,51	MCF-7	breast:
2	chr4:143387939..143398265-chr4:143528932..143544358,55	MCF-7	breast:

Variant related genes	Relation type
ENSG00000109452	Chromatin interaction

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs1031104	0.91[ASN][1000 genomes]
rs10857397	0.85[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1116690	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11723809	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11943397	0.83[ASN][1000 genomes]
rs11944455	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12233703	0.84[ASN][1000 genomes]
rs12500698	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12508480	0.86[ASN][1000 genomes]
rs13102191	0.88[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs13109603	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13109664	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13114452	0.90[ASN][1000 genomes]
rs13119090	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13125362	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs13125853	0.88[ASN][1000 genomes]
rs13133181	0.84[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs1364921	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1364925	0.88[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1373041	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1443187	0.86[ASN][1000 genomes]
rs1443188	0.83[ASN][1000 genomes]
rs1443191	0.94[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1473222	0.80[AMR][1000 genomes]
rs1899565	0.83[ASN][1000 genomes]
rs1961836	0.84[ASN][1000 genomes]
rs2017146	0.92[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs2083781	0.83[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2120158	0.83[ASN][1000 genomes]
rs2165820	0.80[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs2197216	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs2217017	0.88[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs2874870	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2874871	0.88[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs4975311	0.88[AMR][1000 genomes]
rs6537123	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6830053	0.91[ASN][1000 genomes]
rs6830886	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6831966	0.87[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs6839894	0.94[CEU][hapmap];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7434705	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7437824	0.86[ASN][1000 genomes]
rs7441478	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7680076	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7680631	0.91[ASN][1000 genomes]
rs7685086	0.83[ASN][1000 genomes]
rs7695514	0.90[CEU][hapmap];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7698691	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs978361	0.83[ASN][1000 genomes]
rs979194	1.00[CEU][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs979195	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs979196	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461660	chr4:143437219-143538179	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv595605	chr4:143437219-143538179	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv830101	chr4:143518810-143684392	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:143517400-143539400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr4:143520000-143536000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr4:143525600-143535200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr4:143527000-143536200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
5	chr4:143529400-143532200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr4:143529800-143532400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
7	chr4:143530800-143534400	Weak transcription	Stomach Smooth Muscle	stomach
8	chr4:143531200-143533200	Weak transcription	Primary T helper cells fromperipheralblood	blood
9	chr4:143531200-143538600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
10	chr4:143531600-143532200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood

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