Variant report

Variant	rs1364923
Chromosome Location	chr4:143530340-143530341
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10857397	0.83[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs11100752	0.81[ASN][1000 genomes]
rs1116690	0.81[AFR][1000 genomes]
rs13102191	0.84[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs13125362	0.92[AFR][1000 genomes];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1364925	0.89[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs1443191	0.89[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs2017146	0.84[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs2083781	0.91[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs2217017	0.89[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs2874870	0.87[AFR][1000 genomes]
rs2874871	0.88[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs6831966	0.89[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs979194	0.86[AFR][1000 genomes]
rs979195	0.84[AFR][1000 genomes]
rs979196	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461660	chr4:143437219-143538179	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv595605	chr4:143437219-143538179	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv830101	chr4:143518810-143684392	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:143517400-143539400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr4:143520000-143536000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr4:143525600-143535200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr4:143527000-143536200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
5	chr4:143529400-143532200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr4:143529800-143532400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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