Variant report

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10165936	0.82[JPT][hapmap]
rs10173114	0.82[JPT][hapmap]
rs10176061	0.82[JPT][hapmap]
rs10176571	0.80[AMR][1000 genomes]
rs10177346	0.82[AMR][1000 genomes]
rs10179547	0.82[JPT][hapmap]
rs10199645	0.82[JPT][hapmap]
rs10200243	0.82[JPT][hapmap]
rs10205426	0.80[AMR][1000 genomes]
rs10221891	0.81[MEX][hapmap];0.90[TSI][hapmap]
rs1106013	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13399544	0.80[AMR][1000 genomes]
rs13425734	0.82[JPT][hapmap]
rs1365805	0.82[AMR][1000 genomes]
rs1427332	0.82[AMR][1000 genomes]
rs1427334	0.84[AMR][1000 genomes]
rs16867500	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16867502	0.88[MEX][hapmap]
rs1863687	0.81[AMR][1000 genomes]
rs1881158	0.82[JPT][hapmap]
rs1881159	0.82[JPT][hapmap]
rs2368236	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6433934	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6720702	0.86[JPT][hapmap]
rs6748354	0.82[JPT][hapmap]
rs73032649	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7580410	0.82[JPT][hapmap]
rs937297	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs950165	0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005870	chr2:181968637-182921439	Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv536063	chr2:181968637-182921439	Enhancers Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv1001558	chr2:182590009-182732738	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
4	nsv834478	chr2:182654811-182843201	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:182703200-182717200	Weak transcription	Pancreas	Pancrea
2	chr2:182704200-182705400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr2:182704800-182705600	Weak transcription	Duodenum Smooth Muscle	Duodenum

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