Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:37130014..37132119-chr14:37405402..37408164,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000198807	Chromatin interaction

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10130699	0.85[EUR][1000 genomes]
rs10136303	0.85[EUR][1000 genomes]
rs10149290	0.81[EUR][1000 genomes]
rs1154126	0.87[CEU][hapmap];0.81[CHB][hapmap]
rs1156170	1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs11844605	0.87[CHB][hapmap];0.82[JPT][hapmap];0.91[ASN][1000 genomes]
rs12887020	1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs1367031	0.81[EUR][1000 genomes]
rs1429842	0.87[CHB][hapmap];0.82[JPT][hapmap];0.91[ASN][1000 genomes]
rs1429843	0.88[CHB][hapmap];0.83[JPT][hapmap];0.91[ASN][1000 genomes]
rs1429844	0.88[CHB][hapmap];0.83[JPT][hapmap];0.91[ASN][1000 genomes]
rs17105735	0.88[CHB][hapmap];0.83[JPT][hapmap];0.91[ASN][1000 genomes]
rs17105737	0.87[CHB][hapmap];0.82[JPT][hapmap];0.91[ASN][1000 genomes]
rs17105755	0.88[CHB][hapmap];0.83[JPT][hapmap];0.91[ASN][1000 genomes]
rs17105763	0.82[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs2022718	0.92[ASN][1000 genomes]
rs2022720	0.81[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs2022721	0.81[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs59381342	0.91[ASN][1000 genomes]
rs61989472	0.96[ASN][1000 genomes]
rs7141518	0.88[CHB][hapmap];0.82[JPT][hapmap];0.91[ASN][1000 genomes]
rs7156730	0.87[CHB][hapmap];0.91[ASN][1000 genomes]
rs7159710	0.83[CEU][hapmap];0.84[CHB][hapmap];0.84[EUR][1000 genomes]
rs7160143	0.86[EUR][1000 genomes]
rs8015869	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047290	chr14:36564568-37445157	Weak transcription Enhancers Bivalent/Poised TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	43 gene(s)	inside rSNPs	diseases
2	nsv534288	chr14:37254539-37697745	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
3	nsv1050254	chr14:37400173-37445157	Weak transcription Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:37405600-37411400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr14:37405800-37412000	Weak transcription	HMEC	breast
3	chr14:37406000-37409200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr14:37406000-37413200	Weak transcription	Hela-S3	cervix
5	chr14:37406600-37413800	Weak transcription	K562	blood

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