Variant report
| Variant | rs1369286 |
|---|---|
| Chromosome Location | chr5:59172070-59172071 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:26)
| rs_ID | r2[population] |
|---|---|
| rs1003218 | 1.00[CEU][hapmap];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs1003219 | 1.00[CEU][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs10042020 | 1.00[CEU][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10066777 | 1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[ASN][1000 genomes] |
| rs10514880 | 0.93[ASN][1000 genomes] |
| rs10514888 | 1.00[CEU][hapmap];0.98[EUR][1000 genomes] |
| rs154144 | 0.91[ASN][1000 genomes] |
| rs159608 | 0.91[ASN][1000 genomes] |
| rs159610 | 0.91[ASN][1000 genomes] |
| rs159622 | 0.91[ASN][1000 genomes] |
| rs159624 | 0.91[ASN][1000 genomes] |
| rs159626 | 0.91[ASN][1000 genomes] |
| rs16890200 | 0.89[CEU][hapmap];0.91[ASN][1000 genomes] |
| rs16890269 | 1.00[CEU][hapmap];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs16890276 | 1.00[CEU][hapmap];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs16890316 | 1.00[CEU][hapmap];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs173945 | 0.91[ASN][1000 genomes] |
| rs17742850 | 0.89[CEU][hapmap] |
| rs17799450 | 0.88[CEU][hapmap] |
| rs181924 | 0.91[ASN][1000 genomes] |
| rs256348 | 0.91[ASN][1000 genomes] |
| rs256350 | 0.91[ASN][1000 genomes] |
| rs256353 | 0.91[ASN][1000 genomes] |
| rs6859121 | 0.96[ASN][1000 genomes] |
| rs6868846 | 0.88[ASN][1000 genomes] |
| rs6889984 | 1.00[CEU][hapmap];0.90[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1018015 | chr5:58889470-59532667 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 13 gene(s) | inside rSNPs | diseases |
| 2 | nsv537766 | chr5:58889470-59532667 | Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 13 gene(s) | inside rSNPs | diseases |
| 3 | nsv534614 | chr5:58962510-59388525 | Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 12 gene(s) | inside rSNPs | diseases |
| 4 | nsv968095 | chr5:59170889-59174053 | Enhancers Weak transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr5:59160800-59189000 | Weak transcription | Aorta | Aorta |
| 2 | chr5:59167000-59172400 | Enhancers | Hela-S3 | cervix |
