Variant report

Variant	rs1369996
Chromosome Location	chr4:96625060-96625061
allele	C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 81 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:74)

rs_ID	r²[population]
rs10005387	0.81[AMR][1000 genomes]
rs10006440	0.81[AMR][1000 genomes]
rs10012383	0.81[AMR][1000 genomes]
rs10016746	0.95[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs10023027	0.95[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs10024142	0.87[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs10024303	0.81[AMR][1000 genomes]
rs10024516	0.81[AMR][1000 genomes]
rs1025629	0.94[ASN][1000 genomes]
rs11097481	0.81[AMR][1000 genomes]
rs12498523	0.81[AMR][1000 genomes]
rs12502460	0.81[AMR][1000 genomes]
rs12508146	0.81[AMR][1000 genomes]
rs12643258	0.81[AMR][1000 genomes]
rs12643863	0.85[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs12646632	0.81[AMR][1000 genomes]
rs12649375	0.81[AMR][1000 genomes]
rs12649816	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13108901	0.95[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs13114915	0.81[AMR][1000 genomes]
rs13121624	0.91[ASN][1000 genomes]
rs13136054	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13136351	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13139338	0.81[AMR][1000 genomes]
rs13139501	0.92[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs13147649	0.85[AMR][1000 genomes]
rs1370002	0.81[AMR][1000 genomes]
rs1370004	0.95[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs1436580	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1436582	0.89[ASN][1000 genomes]
rs1436586	0.85[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs1579618	0.81[AMR][1000 genomes]
rs1579619	0.81[AMR][1000 genomes]
rs1579625	0.80[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs1579626	0.81[AMR][1000 genomes]
rs1583546	0.94[ASN][1000 genomes]
rs1821738	0.81[AMR][1000 genomes]
rs1821739	0.81[AMR][1000 genomes]
rs1836907	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1836909	0.85[ASN][1000 genomes]
rs1865850	0.81[AMR][1000 genomes]
rs1865851	0.81[AMR][1000 genomes]
rs1898251	0.94[ASN][1000 genomes]
rs2118052	0.81[AMR][1000 genomes]
rs2164544	0.81[AMR][1000 genomes]
rs2164545	0.81[AMR][1000 genomes]
rs2865710	0.80[AMR][1000 genomes]
rs3975035	0.81[AMR][1000 genomes]
rs4422420	0.93[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs4590043	0.81[AMR][1000 genomes]
rs4699275	0.81[AMR][1000 genomes]
rs4699450	0.81[AMR][1000 genomes]
rs4699451	0.81[AMR][1000 genomes]
rs6821135	0.81[AMR][1000 genomes]
rs6821324	0.81[AMR][1000 genomes]
rs6843996	0.80[AMR][1000 genomes]
rs6844205	0.81[AMR][1000 genomes]
rs6853495	0.81[AMR][1000 genomes]
rs6854333	0.95[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs6854348	0.81[AMR][1000 genomes]
rs6854512	0.80[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs7438910	0.87[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs7658878	0.81[AMR][1000 genomes]
rs7667706	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7680769	0.81[AMR][1000 genomes]
rs7680812	0.81[AMR][1000 genomes]
rs7680962	0.95[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs7681281	0.81[AMR][1000 genomes]
rs9993422	0.81[AMR][1000 genomes]
rs9993596	0.81[AMR][1000 genomes]
rs9994206	0.81[AMR][1000 genomes]
rs9994390	0.81[AMR][1000 genomes]
rs9996557	0.91[ASN][1000 genomes]
rs9997433	0.85[AFR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830012	chr4:96547783-96746163	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv1844506	chr4:96554889-96704333	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv997304	chr4:96575198-96861349	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	esv1846406	chr4:96599084-96664321	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv1010830	chr4:96607025-96862878	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv537191	chr4:96607025-96862878	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	esv1843331	chr4:96619599-96664321	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:96623800-96628000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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