Variant report

Variant	rs1370299
Chromosome Location	chr4:147935557-147935558
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1036499	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11734148	0.87[AFR][1000 genomes]
rs13150180	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17022216	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17022238	0.91[ASN][1000 genomes]
rs2118258	0.91[ASN][1000 genomes]
rs28430726	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28628802	0.91[ASN][1000 genomes]
rs28735087	0.91[ASN][1000 genomes]
rs34866575	0.90[AFR][1000 genomes]
rs35488106	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3747688	0.94[AFR][1000 genomes]
rs4467588	0.91[ASN][1000 genomes]
rs71616517	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880240	chr4:147905897-148032003	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv461676	chr4:147927227-147962432	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv595652	chr4:147927227-147962432	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv1016598	chr4:147931134-148012064	Active TSS Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:147925800-147936600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr4:147932600-147937200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr4:147933200-147936400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr4:147933400-147936200	Weak transcription	Brain Germinal Matrix	brain
5	chr4:147933800-147936200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr4:147933800-147936400	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr4:147933800-147936400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr4:147934000-147936000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr4:147934400-147936000	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr4:147934400-147936200	Weak transcription	HUES64 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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