Variant report

Variant	rs1370602
Chromosome Location	chr2:133688972-133688973
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10195459	0.84[EUR][1000 genomes]
rs1020429	0.84[CHD][hapmap];0.91[JPT][hapmap];0.87[MEX][hapmap]
rs10207480	0.88[MEX][hapmap];0.84[EUR][1000 genomes]
rs1036543	0.82[CHD][hapmap];0.91[JPT][hapmap]
rs11897541	0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs1447545	0.95[JPT][hapmap]
rs17398599	0.94[CEU][hapmap];0.81[GIH][hapmap]
rs1898563	0.89[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.89[YRI][hapmap];0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1898564	0.89[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.88[YRI][hapmap];0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs281575	0.91[CHB][hapmap];0.95[JPT][hapmap];0.88[MEX][hapmap]
rs281579	0.95[CHB][hapmap];0.91[JPT][hapmap];0.81[ASN][1000 genomes]
rs281584	0.91[CHB][hapmap];0.82[JPT][hapmap]
rs4953863	0.85[CHD][hapmap];0.91[JPT][hapmap]
rs4954011	0.86[CHB][hapmap];0.80[EUR][1000 genomes]
rs6716135	0.80[EUR][1000 genomes]
rs6726055	0.81[EUR][1000 genomes]
rs6748489	0.80[EUR][1000 genomes]
rs6752737	0.80[MEX][hapmap];0.82[TSI][hapmap];0.80[EUR][1000 genomes]
rs7588407	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7597826	0.91[CHB][hapmap];0.90[JPT][hapmap];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875137	chr2:133167263-133714142	Enhancers Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv583158	chr2:133316092-133862100	Weak transcription ZNF genes & repeats Enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv875138	chr2:133410921-133761794	Enhancers Bivalent/Poised TSS Strong transcription Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
4	nsv1002955	chr2:133440142-133743211	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv1004604	chr2:133658116-133761794	Enhancers Active TSS Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv916805	chr2:133664765-133924973	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:133682000-133693200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr2:133682200-133690000	Weak transcription	Liver	Liver
3	chr2:133687400-133690000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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