Variant report

Variant	rs1371732
Chromosome Location	chr4:47970350-47970351
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10002500	0.86[CHB][hapmap];0.87[JPT][hapmap];0.83[ASN][1000 genomes]
rs10461076	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10517202	0.84[CEU][hapmap]
rs10805160	0.82[CEU][hapmap];0.80[EUR][1000 genomes]
rs11733288	0.86[CHB][hapmap];0.91[JPT][hapmap]
rs11939754	0.82[EUR][1000 genomes]
rs12640473	0.84[CEU][hapmap]
rs12645245	0.86[CHB][hapmap];0.91[JPT][hapmap]
rs1507913	0.85[ASN][1000 genomes]
rs1507914	0.85[ASN][1000 genomes]
rs17573709	0.81[YRI][hapmap]
rs1837518	0.82[ASN][1000 genomes]
rs1866688	0.86[CHB][hapmap]
rs188901	0.80[ASN][1000 genomes]
rs1899060	0.83[ASN][1000 genomes]
rs1984713	0.81[YRI][hapmap]
rs224800	0.82[ASN][1000 genomes]
rs2581493	0.85[ASN][1000 genomes]
rs28642966	0.81[CHB][hapmap]
rs28699496	0.92[ASN][1000 genomes]
rs3113881	0.95[CHB][hapmap];0.91[JPT][hapmap];0.81[ASN][1000 genomes]
rs3113882	0.83[ASN][1000 genomes]
rs321623	0.90[CHB][hapmap];0.91[JPT][hapmap]
rs321633	0.86[CHB][hapmap];0.91[JPT][hapmap]
rs321642	0.81[ASN][1000 genomes]
rs321644	0.82[ASN][1000 genomes]
rs321646	0.82[ASN][1000 genomes]
rs3950558	0.90[CHB][hapmap];0.91[JPT][hapmap]
rs4695318	0.84[CEU][hapmap]
rs55896433	0.83[EUR][1000 genomes]
rs6447603	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7435526	0.83[EUR][1000 genomes]
rs7656966	0.84[CEU][hapmap];0.83[EUR][1000 genomes]
rs7687722	0.82[CEU][hapmap]
rs7694104	0.84[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3447039	chr4:47822266-48285222	Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
2	nsv1013947	chr4:47915527-48052824	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv537082	chr4:47915527-48052824	Flanking Active TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv1006745	chr4:47935250-48052824	Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv537083	chr4:47935250-48052824	Enhancers Active TSS Genic enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv967291	chr4:47954000-47981934	Enhancers Active TSS Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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