Variant report

Variant	rs1372808
Chromosome Location	chr11:10244803-10244804
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:10242439..10244914-chr11:10314504..10317346,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000133812	Chromatin interaction

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs10770103	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10840375	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10840377	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11042595	0.80[EUR][1000 genomes]
rs11042601	0.82[EUR][1000 genomes]
rs11042609	0.82[EUR][1000 genomes]
rs11042615	0.82[EUR][1000 genomes]
rs11042618	0.83[EUR][1000 genomes]
rs11042623	0.82[EUR][1000 genomes]
rs11042632	0.81[EUR][1000 genomes]
rs11042641	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11042683	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11600251	0.85[EUR][1000 genomes]
rs11600489	0.86[EUR][1000 genomes]
rs11606561	0.85[EUR][1000 genomes]
rs11607682	0.82[EUR][1000 genomes]
rs11607703	0.82[EUR][1000 genomes]
rs12360783	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12362060	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12362938	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12416695	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12417184	0.81[EUR][1000 genomes]
rs12418212	0.82[EUR][1000 genomes]
rs12418619	0.82[EUR][1000 genomes]
rs12420122	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12420734	0.83[EUR][1000 genomes]
rs12421096	0.83[EUR][1000 genomes]
rs12421179	0.83[EUR][1000 genomes]
rs12421931	0.83[EUR][1000 genomes]
rs1442737	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17359113	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1822291	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1822292	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1867135	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2197171	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2403292	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs28731164	0.82[EUR][1000 genomes]
rs34683105	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4271380	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4281477	0.80[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4385889	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4519084	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4643073	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4910095	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4910098	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs55788918	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs55796222	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs56853694	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs59060963	0.81[AFR][1000 genomes]
rs61878582	0.83[EUR][1000 genomes]
rs61878587	0.83[EUR][1000 genomes]
rs61878622	0.82[EUR][1000 genomes]
rs61878636	0.83[EUR][1000 genomes]
rs61889838	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7123453	0.86[EUR][1000 genomes]
rs7123820	0.80[EUR][1000 genomes]
rs7924875	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7935774	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7935934	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7938491	0.87[EUR][1000 genomes]
rs7938647	0.80[EUR][1000 genomes]
rs7945980	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7947306	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7948215	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7950447	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv1039636	chr11:10126747-10280570	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10230600-10246800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr11:10231000-10254400	Weak transcription	NHDF-Ad	bronchial
3	chr11:10231000-10254400	Weak transcription	NHLF	lung
4	chr11:10235400-10263400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr11:10240600-10259800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr11:10241000-10253600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr11:10241200-10252800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr11:10241200-10255200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr11:10241800-10254800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr11:10242400-10253600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr11:10242600-10252800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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