Variant report

Variant	rs1373031
Chromosome Location	chr4:143649411-143649412
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 109 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:106)

rs_ID	r²[population]
rs10024696	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1031104	0.90[CHB][hapmap]
rs10857399	1.00[CEU][hapmap];0.90[CHB][hapmap];0.93[JPT][hapmap];0.96[YRI][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11100754	0.96[CEU][hapmap];0.88[EUR][1000 genomes]
rs11100760	0.81[EUR][1000 genomes]
rs11723982	0.82[ASN][1000 genomes]
rs11724017	0.84[ASN][1000 genomes]
rs11726381	0.88[ASN][1000 genomes]
rs11933763	0.94[EUR][1000 genomes]
rs11943397	0.81[CHB][hapmap]
rs12509304	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12640389	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12644329	0.88[EUR][1000 genomes]
rs12650777	0.89[CHB][hapmap]
rs13117185	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13141925	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13435565	0.88[EUR][1000 genomes]
rs1373030	0.90[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs1373032	0.89[EUR][1000 genomes]
rs1373034	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs1441417	0.90[CHB][hapmap];0.85[JPT][hapmap]
rs1443183	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1443185	0.88[EUR][1000 genomes]
rs1443186	0.88[EUR][1000 genomes]
rs1443187	0.88[CEU][hapmap];0.86[CHB][hapmap];0.82[CHD][hapmap];0.88[GIH][hapmap];0.86[TSI][hapmap];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1465962	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs167960	0.84[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs17016768	1.00[CHB][hapmap];0.88[CHD][hapmap];0.85[GIH][hapmap];0.81[TSI][hapmap];0.88[ASN][1000 genomes]
rs17016777	0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17016779	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17732408	0.88[ASN][1000 genomes]
rs17732791	0.85[EUR][1000 genomes]
rs179508	0.91[EUR][1000 genomes]
rs1822360	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1822361	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1822362	0.90[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs1838082	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1867214	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1899565	0.81[CHB][hapmap]
rs191762	0.95[CEU][hapmap];0.81[JPT][hapmap];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1965828	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1992417	0.84[EUR][1000 genomes]
rs1992418	0.84[EUR][1000 genomes]
rs2120158	0.81[CHB][hapmap]
rs2589994	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28420913	0.88[EUR][1000 genomes]
rs3113593	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs331939	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs331940	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs331942	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs331943	0.80[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs331944	0.80[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs331945	1.00[CHB][hapmap];0.88[CHD][hapmap];0.83[GIH][hapmap];0.81[TSI][hapmap];0.80[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs331946	0.80[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs331947	0.80[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs331948	0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs331949	0.91[EUR][1000 genomes]
rs331950	0.91[EUR][1000 genomes]
rs331951	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs331952	0.84[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs331953	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs331954	0.84[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs331956	0.84[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs331957	0.84[EUR][1000 genomes]
rs331958	0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs331959	0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs331960	0.84[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs331961	0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs331962	0.80[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs331963	0.91[EUR][1000 genomes]
rs331964	0.80[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs331965	0.80[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs331966	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34442253	0.89[EUR][1000 genomes]
rs4690699	0.96[CEU][hapmap];0.81[JPT][hapmap];0.88[TSI][hapmap];0.89[EUR][1000 genomes]
rs4690700	0.90[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs4690725	0.90[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs4690726	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4690727	0.84[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs56011189	0.90[ASN][1000 genomes]
rs56332157	0.87[ASN][1000 genomes]
rs6537124	0.96[CEU][hapmap];0.81[JPT][hapmap];0.88[TSI][hapmap];0.91[EUR][1000 genomes]
rs6537127	0.83[EUR][1000 genomes]
rs6537129	1.00[CHB][hapmap]
rs6811022	0.81[JPT][hapmap]
rs6813458	0.87[EUR][1000 genomes]
rs6816424	0.88[EUR][1000 genomes]
rs6819498	0.88[EUR][1000 genomes]
rs6830053	0.90[CHB][hapmap]
rs6831562	0.82[EUR][1000 genomes]
rs6831927	0.88[EUR][1000 genomes]
rs6839158	0.90[CHB][hapmap]
rs6844306	0.88[EUR][1000 genomes]
rs6845583	0.88[EUR][1000 genomes]
rs6852570	0.96[CEU][hapmap];0.81[JPT][hapmap];0.91[EUR][1000 genomes]
rs72728641	0.90[ASN][1000 genomes]
rs72728649	0.87[ASN][1000 genomes]
rs72728651	0.86[ASN][1000 genomes]
rs72728667	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7376475	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7656375	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs7663475	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs7666140	1.00[CHB][hapmap];0.88[CHD][hapmap];0.83[GIH][hapmap];0.81[TSI][hapmap];0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs7667183	0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7688275	0.86[EUR][1000 genomes]
rs966457	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830101	chr4:143518810-143684392	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv595606	chr4:143631691-143729595	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv880174	chr4:143639498-143848024	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:143630800-143650200	Weak transcription	Aorta	Aorta
2	chr4:143637200-143653000	Weak transcription	Left Ventricle	heart
3	chr4:143641600-143652800	Weak transcription	Primary hematopoietic stem cells	blood
4	chr4:143642800-143664200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr4:143647400-143652200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr4:143648200-143650600	Enhancers	Thymus	Thymus
7	chr4:143648200-143651000	Enhancers	Fetal Thymus	thymus
8	chr4:143648400-143653200	Enhancers	Dnd41	blood
9	chr4:143648800-143650000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr4:143649000-143652800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr4:143649200-143650200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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