Variant report

Variant	rs1377182
Chromosome Location	chr1:215168126-215168127
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs2601635	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2841619	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv468105	chr1:215167236-215248417	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv549182	chr1:215167236-215248417	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:215163800-215168200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr1:215164200-215174800	Weak transcription	NH-A	brain
3	chr1:215164800-215175000	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr1:215167200-215170600	Weak transcription	Osteobl	bone
5	chr1:215167400-215174600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr1:215167800-215168400	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr1:215167800-215168600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr1:215167800-215169000	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr1:215168000-215174800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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