Variant report

Variant	rs1377982
Chromosome Location	chr6:81351477-81351478
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11753406	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11755359	0.81[EUR][1000 genomes]
rs11755551	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11759374	0.81[EUR][1000 genomes]
rs11759781	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1584898	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16892000	1.00[ASN][1000 genomes]
rs16892070	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2444803	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2496687	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2503747	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56080413	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs56134318	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs57763740	0.81[EUR][1000 genomes]
rs58359379	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs59081426	1.00[ASN][1000 genomes]
rs73465708	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73748844	0.81[EUR][1000 genomes]
rs7773045	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531333	chr6:81042427-81836484	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv1019670	chr6:81086504-81569984	ZNF genes & repeats Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv915714	chr6:81134888-81366749	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv1020533	chr6:81288890-81406533	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv538340	chr6:81288890-81406533	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv604085	chr6:81297890-81439973	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv1015520	chr6:81309213-81374699	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv886314	chr6:81341175-81379791	Weak transcription Enhancers Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases
9	esv3324409	chr6:81349858-81352406	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
10	esv3328252	chr6:81350108-81352256	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:81348800-81359800	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr6:81349000-81352600	Weak transcription	Stomach Mucosa	stomach
3	chr6:81349200-81351600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr6:81349200-81351600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr6:81349200-81351600	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr6:81349200-81351600	Weak transcription	HSMM	muscle
7	chr6:81349800-81353000	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr6:81351400-81351600	Enhancers	Osteobl	bone
9	chr6:81351400-81352200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr6:81351400-81352200	Enhancers	NHLF	lung
11	chr6:81351400-81353400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr6:81351400-81353400	Enhancers	NHDF-Ad	bronchial

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links