Variant report
| Variant | rs1378519 |
|---|---|
| Chromosome Location | chr8:63840444-63840445 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:28)
| rs_ID | r2[population] |
|---|---|
| rs11991808 | 1.00[EUR][1000 genomes] |
| rs11993344 | 1.00[EUR][1000 genomes] |
| rs1351350 | 1.00[EUR][1000 genomes] |
| rs1455577 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs1480117 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs2353365 | 1.00[EUR][1000 genomes] |
| rs2883147 | 1.00[EUR][1000 genomes] |
| rs4270960 | 1.00[EUR][1000 genomes] |
| rs57145420 | 1.00[EUR][1000 genomes] |
| rs60595425 | 1.00[EUR][1000 genomes] |
| rs61144659 | 1.00[EUR][1000 genomes] |
| rs6982424 | 1.00[EUR][1000 genomes] |
| rs6986007 | 0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7000089 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7003391 | 1.00[EUR][1000 genomes] |
| rs73266757 | 1.00[EUR][1000 genomes] |
| rs73266758 | 1.00[EUR][1000 genomes] |
| rs73266781 | 1.00[EUR][1000 genomes] |
| rs73268678 | 1.00[EUR][1000 genomes] |
| rs73268679 | 1.00[EUR][1000 genomes] |
| rs73268681 | 1.00[EUR][1000 genomes] |
| rs73270521 | 1.00[EUR][1000 genomes] |
| rs73270530 | 1.00[EUR][1000 genomes] |
| rs73270590 | 1.00[EUR][1000 genomes] |
| rs73272416 | 1.00[EUR][1000 genomes] |
| rs7823443 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7831801 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7837948 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1018879 | chr8:63281724-63937632 | Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 12 gene(s) | inside rSNPs | diseases |
| 2 | nsv831341 | chr8:63658694-63852213 | Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 3 | nsv1033527 | chr8:63673915-64073735 | Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 18 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr8:63838600-63841400 | Weak transcription | H1 Derived Neuronal Progenitor Cultured Cells | ES cell derived |
