Variant report

Variant	rs1383407
Chromosome Location	chr3:78908171-78908172
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs1031932	0.82[CEU][hapmap];0.91[CHB][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.87[MKK][hapmap];0.93[TSI][hapmap];0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11127636	0.85[CEU][hapmap];0.91[CHB][hapmap];0.90[GIH][hapmap];0.91[JPT][hapmap];0.84[MEX][hapmap];0.88[TSI][hapmap];0.86[EUR][1000 genomes]
rs1843786	0.81[CEU][hapmap]
rs189022	0.86[CHB][hapmap];0.86[JPT][hapmap]
rs4680943	0.85[CEU][hapmap];0.85[EUR][1000 genomes]
rs9835958	1.00[ASW][hapmap];1.00[LWK][hapmap];0.80[AMR][1000 genomes]
rs9863758	0.86[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010804	chr3:78739648-79087470	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv533681	chr3:78750924-79017336	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:78896600-78908400	Weak transcription	Osteobl	bone
2	chr3:78905600-78908200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr3:78905800-78916200	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr3:78906800-78908400	Enhancers	A549	lung
5	chr3:78906800-78908400	Enhancers	HepG2	liver
6	chr3:78907000-78908400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr3:78907200-78908200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr3:78907400-78916800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr3:78907600-78912600	Weak transcription	NHDF-Ad	bronchial
10	chr3:78907600-78920200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr3:78907800-78916200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr3:78908000-78908200	Enhancers	Fetal Kidney	kidney
13	chr3:78908000-78908400	Enhancers	NH-A	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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