Variant report

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10034295	0.90[CHB][hapmap];0.84[CHD][hapmap];0.83[GIH][hapmap];0.85[JPT][hapmap];0.87[ASN][1000 genomes]
rs11722437	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1275045	0.81[AMR][1000 genomes]
rs1275047	0.80[JPT][hapmap]
rs13108247	0.81[MEX][hapmap]
rs1383426	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1480718	0.80[JPT][hapmap]
rs1480733	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1825022	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1979444	0.81[MEX][hapmap]
rs2046104	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3937772	0.82[CHB][hapmap];0.83[AMR][1000 genomes]
rs4512020	0.81[MEX][hapmap]
rs4576033	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62308043	0.86[ASN][1000 genomes]
rs6534090	0.94[CEU][hapmap];0.95[CHB][hapmap];0.92[CHD][hapmap];0.98[GIH][hapmap];0.95[JPT][hapmap];0.86[MEX][hapmap];0.95[TSI][hapmap];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6830661	0.80[YRI][hapmap]
rs6846743	0.90[CHB][hapmap];0.90[JPT][hapmap];0.87[ASN][1000 genomes]
rs6854347	0.81[MEX][hapmap]
rs725500	0.98[ASN][1000 genomes]
rs7664339	0.87[CEU][hapmap]
rs7677084	0.81[CEU][hapmap]
rs7692418	0.80[YRI][hapmap]
rs7692450	0.80[YRI][hapmap]
rs931149	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs931150	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9993426	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829979	chr4:79819168-80019159	Active TSS Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv1000907	chr4:79838948-80224764	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs1383425	ANXA3	cis	multi-tissue	Pritchard
rs1383425	NAAA	cis	parietal	SCAN
rs1383425	CGN	trans	lymphoblastoid	seeQTL

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:79870400-79881600	Weak transcription	Aorta	Aorta
2	chr4:79873800-79878000	Weak transcription	Fetal Brain Female	brain
3	chr4:79877600-79878400	Enhancers	K562	blood
4	chr4:79877600-79878600	Enhancers	Fetal Heart	heart

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