The 2.0 version of rSNPBase

Variant report

Variant rs138361198
Chromosome Location chr8:110594791-110594792
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:61 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr8:110553800-110613000 Weak transcription NHLF lung
2 chr8:110583800-110601600 Weak transcription Duodenum Smooth Muscle Duodenum
3 chr8:110586000-110598800 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
4 chr8:110587800-110605800 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
5 chr8:110588000-110594800 Weak transcription Skeletal Muscle Female skeletal muscle
6 chr8:110588000-110600600 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
7 chr8:110588200-110598200 Weak transcription Ovary ovary
8 chr8:110588200-110601600 Weak transcription Left Ventricle heart
9 chr8:110588600-110596600 Weak transcription Colon Smooth Muscle Colon
10 chr8:110589200-110598600 Strong transcription Breast Myoepithelial Primary Cells Breast
11 chr8:110589800-110595200 Weak transcription Psoas Muscle Psoas
12 chr8:110589800-110598000 Weak transcription Brain Substantia Nigra brain
13 chr8:110589800-110598200 Weak transcription Brain Cingulate Gyrus brain
14 chr8:110589800-110601600 Weak transcription Right Atrium heart
15 chr8:110590000-110597800 Weak transcription Pancreatic Islets Pancreatic Islet
16 chr8:110590000-110605600 Weak transcription K562 blood
17 chr8:110590200-110654800 Weak transcription Lung lung
18 chr8:110590800-110597800 Weak transcription Brain Hippocampus Middle brain
19 chr8:110591200-110601600 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
20 chr8:110591600-110595200 Weak transcription Fetal Muscle Leg muscle
21 chr8:110591600-110596000 Weak transcription HepG2 liver
22 chr8:110591600-110597000 Weak transcription Rectal Smooth Muscle rectum
23 chr8:110591600-110597600 Weak transcription Colonic Mucosa Colon
24 chr8:110591600-110598400 Weak transcription Right Ventricle heart
25 chr8:110591600-110599400 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
26 chr8:110591600-110601600 Weak transcription Skeletal Muscle Male skeletal muscle
27 chr8:110591600-110609400 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
28 chr8:110591800-110598200 Weak transcription Fetal Stomach stomach
29 chr8:110592000-110601400 Weak transcription Brain Angular Gyrus brain
30 chr8:110592200-110595800 Genic enhancers Liver Liver
31 chr8:110592200-110596800 Weak transcription Fetal Intestine Large intestine
32 chr8:110592200-110597400 Weak transcription Brain Inferior Temporal Lobe brain
33 chr8:110592200-110601600 Weak transcription NHEK skin
34 chr8:110592200-110604600 Weak transcription Gastric stomach
35 chr8:110592400-110596600 Weak transcription Fetal Brain Female brain
36 chr8:110592400-110597600 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
37 chr8:110592400-110601800 Weak transcription Brain Germinal Matrix brain
38 chr8:110592800-110597000 Weak transcription Duodenum Mucosa Duodenum
39 chr8:110593000-110595800 Weak transcription Fetal Intestine Small intestine
40 chr8:110593200-110596200 Weak transcription Small Intestine intestine
41 chr8:110593200-110598600 Strong transcription Cortex derived primary cultured neurospheres brain
42 chr8:110593400-110594800 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
43 chr8:110593400-110595400 Weak transcription Rectal Mucosa Donor 31 rectum
44 chr8:110593400-110597600 Weak transcription Esophagus oesophagus
45 chr8:110593600-110594800 Enhancers Fetal Brain Male brain
46 chr8:110593600-110596000 Weak transcription Muscle Satellite Cultured Cells --
47 chr8:110593600-110596200 Weak transcription Fetal Adrenal Gland Adrenal Gland
48 chr8:110593600-110597000 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
49 chr8:110593600-110597000 Weak transcription Rectal Mucosa Donor 29 rectum
50 chr8:110593600-110601400 Weak transcription HMEC breast

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Last update: Aug 31, 2015