Variant report

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs1318850	0.90[EUR][1000 genomes]
rs1546695	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1574857	0.90[EUR][1000 genomes]
rs2200017	0.86[EUR][1000 genomes]
rs2341812	0.89[EUR][1000 genomes]
rs2341813	0.87[EUR][1000 genomes]
rs2880156	0.86[EUR][1000 genomes]
rs4426705	0.89[EUR][1000 genomes]
rs4481186	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs59089459	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62281919	0.84[EUR][1000 genomes]
rs62281920	0.85[EUR][1000 genomes]
rs62281921	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62281949	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62283771	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6440525	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6788883	0.83[EUR][1000 genomes]
rs6789067	0.81[EUR][1000 genomes]
rs71620012	0.86[EUR][1000 genomes]
rs73138428	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7615735	0.85[EUR][1000 genomes]
rs7622093	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7628173	0.83[EUR][1000 genomes]
rs7633383	0.85[EUR][1000 genomes]
rs7637232	0.85[EUR][1000 genomes]
rs974686	0.87[EUR][1000 genomes]
rs9823613	0.88[EUR][1000 genomes]
rs9860091	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007140	chr3:98421229-99202458	Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv536663	chr3:98421229-99202458	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
3	nsv1007486	chr3:98597738-99249081	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv530026	chr3:98837320-99340537	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1383839	NAPEPLD	trans	cerebellum	SCAN

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:99031400-99033600	Enhancers	Muscle Satellite Cultured Cells	--
2	chr3:99031400-99033600	Enhancers	HUVEC	blood vessel
3	chr3:99031600-99033000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr3:99031600-99033400	Enhancers	Osteobl	bone
5	chr3:99031800-99032000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr3:99031800-99032000	Enhancers	Aorta	Aorta
7	chr3:99031800-99032200	Enhancers	Fetal Stomach	stomach
8	chr3:99031800-99033400	Enhancers	NHDF-Ad	bronchial

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