Variant report

Variant	rs1388295
Chromosome Location	chr4:100633357-100633358
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:100629054..100631992-chr4:100633105..100635868,2	MCF-7	breast:
2	chr4:100506307..100509008-chr4:100631570..100633807,2	MCF-7	breast:

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs1027223	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10516455	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1115721	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11722443	0.94[ASN][1000 genomes]
rs11729858	0.83[CHB][hapmap]
rs11730739	0.90[ASN][1000 genomes]
rs11936303	0.95[ASN][1000 genomes]
rs12639747	1.00[CEU][hapmap];0.87[JPT][hapmap]
rs12640222	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12642668	0.85[ASN][1000 genomes]
rs12643245	0.94[ASN][1000 genomes]
rs12648843	0.93[ASN][1000 genomes]
rs13111133	0.86[ASN][1000 genomes]
rs13111603	0.86[ASN][1000 genomes]
rs13112253	0.89[CHB][hapmap];0.90[ASN][1000 genomes]
rs13114983	0.81[ASN][1000 genomes]
rs13118288	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13123629	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13123690	0.90[ASN][1000 genomes]
rs13124255	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13130068	0.95[ASN][1000 genomes]
rs13131135	1.00[CEU][hapmap]
rs13150247	0.94[ASN][1000 genomes]
rs1352775	0.89[CHB][hapmap];0.81[JPT][hapmap];0.92[ASN][1000 genomes]
rs1426734	0.86[ASN][1000 genomes]
rs1491234	0.85[JPT][hapmap]
rs1491240	1.00[CEU][hapmap];0.88[JPT][hapmap]
rs1582793	0.87[ASN][1000 genomes]
rs1586756	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1586757	0.96[ASN][1000 genomes]
rs17029269	0.81[ASN][1000 genomes]
rs17029387	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs17029575	1.00[CEU][hapmap]
rs1816197	0.93[ASN][1000 genomes]
rs1834659	0.86[ASN][1000 genomes]
rs1948353	0.95[ASN][1000 genomes]
rs2306986	1.00[CEU][hapmap];0.88[JPT][hapmap]
rs2866167	0.96[ASN][1000 genomes]
rs35215295	0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs36098323	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3792683	1.00[CEU][hapmap];0.88[JPT][hapmap]
rs4699758	1.00[CEU][hapmap]
rs61705069	0.92[ASN][1000 genomes]
rs66931934	0.82[ASN][1000 genomes]
rs6831328	0.95[ASN][1000 genomes]
rs6832692	0.95[ASN][1000 genomes]
rs6840719	0.92[ASN][1000 genomes]
rs6846293	0.84[CHB][hapmap]
rs71614607	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7670607	1.00[CHB][hapmap];0.93[ASN][1000 genomes]
rs7675468	1.00[CEU][hapmap];0.88[JPT][hapmap]
rs7677594	0.96[ASN][1000 genomes]
rs7678142	1.00[CEU][hapmap];0.88[JPT][hapmap]
rs7678889	0.90[ASN][1000 genomes]
rs7688255	0.86[ASN][1000 genomes]
rs7691498	0.85[ASN][1000 genomes]
rs884276	1.00[CEU][hapmap];0.87[JPT][hapmap]
rs958868	1.00[CEU][hapmap];0.88[JPT][hapmap]

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:100630600-100635200	Weak transcription	Psoas Muscle	Psoas
2	chr4:100631000-100633600	Enhancers	HMEC	breast
3	chr4:100631200-100633400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr4:100631200-100633400	Enhancers	NHEK	skin
5	chr4:100631800-100633600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr4:100631800-100636400	Weak transcription	Left Ventricle	heart
7	chr4:100632400-100633400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr4:100632800-100634000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr4:100632800-100637600	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr4:100633000-100638200	Weak transcription	Hela-S3	cervix

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