Variant report

Variant	rs139071356
Chromosome Location	chr7:126883652-126883653
allele	-/A
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:61)
Chromatin interactive
region (count:1)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr7:126883640-126883690	Jurkat	blood:	n/a
2	chr7:126883640-126883690	HepG2	liver:	n/a
3	chr7:126883640-126883690	IMR90	lung:	fetal
4	chr7:126883640-126883690	HIPEpiC	eye:	n/a
5	chr7:126883640-126883690	ECC-1	luminal epithelium:	n/a
6	chr7:126883640-126883690	AG04449	skin:	fetal
7	chr7:126883640-126883690	GM12878	blood:	n/a
8	chr7:126883640-126883690	K562	blood:	n/a
9	chr7:126883640-126883690	CMK	blood:	n/a
10	chr7:126883640-126883690	PFSK-1	brain:	n/a
11	chr7:126883640-126883690	U87	brain:	n/a
12	chr7:126883640-126883690	HRCEpiC	kidney:	n/a
13	chr7:126883640-126883690	PANC-1	pancreas:	n/a
14	chr7:126883640-126883690	Hela-S3	cervix:	n/a
15	chr7:126883640-126883690	AG10803	skin:	n/a
16	chr7:126883640-126883690	RPTEC	kidney:	n/a
17	chr7:126883640-126883690	A549	lung:	n/a
18	chr7:126883640-126883690	T-47D	breast:	n/a
19	chr7:126883640-126883690	HEEpiC	esophagus:	n/a
20	chr7:126883640-126883690	ProgFib	skin:	n/a
21	chr7:126883640-126883690	NHBE	bronchial:	n/a
22	chr7:126883640-126883690	HNPCEpiC	eye:	n/a
23	chr7:126883640-126883690	LNCaP	prostate:	n/a
24	chr7:126883640-126883690	AoSMC	blood vessel:	n/a
25	chr7:126883640-126883690	HRPEpiC	eye:	n/a
26	chr7:126883640-126883690	AG04450	lung:	fetal
27	chr7:126883640-126883690	GM12892	blood:	n/a
28	chr7:126883640-126883690	SKMC	muscle:	n/a
29	chr7:126883640-126883690	NT2-D1	testis:	n/a
30	chr7:126883640-126883690	H1-hESC	embryonic stem cell:	embryo
31	chr7:126883640-126883690	HCM	heart:	n/a
32	chr7:126883640-126883690	HRE	kidney:	n/a
33	chr7:126883640-126883690	HEK293	kidney:	embryo
34	chr7:126883640-126883690	SK-N-MC	brain:	n/a
35	chr7:126883640-126883690	HCF	heart:	n/a
36	chr7:126883640-126883690	GM12891	blood:	n/a
37	chr7:126883640-126883690	GM06990	blood:	n/a
38	chr7:126883640-126883690	SK-N-SH_RA	brain:	n/a
39	chr7:126883640-126883690	Caco-2	colon:	n/a
40	chr7:126883640-126883690	SAEC	small airway:	n/a
41	chr7:126883640-126883690	Hepatocyte	liver:	n/a
42	chr7:126883640-126883690	AG09319	gingival:	n/a
43	chr7:126883640-126883690	HL-60	blood:	n/a
44	chr7:126883640-126883690	MCF-7	breast:	n/a
45	chr7:126883640-126883690	HPAEpiC	pulmonary alveolar:	n/a
46	chr7:126883640-126883690	ovcar-3	ovarian:	n/a
47	chr7:126883640-126883690	NHDF-neo	bronchial:	n/a
48	chr7:126883640-126883690	HCT-116	colon:	n/a
49	chr7:126883640-126883690	MCF10A-Er-Src	breast:	n/a
50	chr7:126883640-126883690	NB4	blood:	n/a

(count:1 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:126883585..126886396-chr7:126892877..126894797,2	K562	blood:

No data

Variant related genes	Relation type
GRM8	CpG island
ENSG00000179603	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889189	chr7:126699088-126963028	Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv1819919	chr7:126850298-126888714	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv464712	chr7:126881029-126908258	Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent/Poised TSS Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv608380	chr7:126881029-126908258	Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
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