Variant report

Variant	rs1391432
Chromosome Location	chr1:61559138-61559139
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:61514738..61525752-chr1:61554119..61562013,14	K562	blood:
2	chr1:61558889..61561862-chr1:61574499..61577159,2	K562	blood:
3	chr1:61517870..61519563-chr1:61557073..61560001,2	K562	blood:
4	chr1:61558428..61559949-chr1:61569438..61571785,2	K562	blood:
5	chr1:61514738..61517434-chr1:61556907..61559504,2	K562	blood:
6	chr1:61558952..61561705-chr1:61569096..61571977,3	K562	blood:

Variant related genes	Relation type
ENSG00000162599	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10493302	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10889206	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12082005	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12133298	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1909118	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2050544	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2807990	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs334735	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs334736	0.89[EUR][1000 genomes]
rs334738	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs384893	1.00[CEU][hapmap];0.95[JPT][hapmap];0.80[YRI][hapmap];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4430360	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.81[YRI][hapmap];0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4620575	0.86[JPT][hapmap]
rs6670604	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9436630	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs964091	0.86[JPT][hapmap]

No data

Chromatin state (count:75 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:61549800-61559400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr1:61550200-61559400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr1:61550400-61560000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr1:61550600-61561000	Weak transcription	Colonic Mucosa	Colon
5	chr1:61550800-61559600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr1:61554400-61559400	Weak transcription	Osteobl	bone
7	chr1:61554600-61559400	Weak transcription	Left Ventricle	heart
8	chr1:61554600-61559400	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr1:61554600-61559400	Weak transcription	HMEC	breast
10	chr1:61554600-61560200	Weak transcription	Ovary	ovary
11	chr1:61554600-61561800	Weak transcription	Pancreas	Pancrea
12	chr1:61554600-61563000	Weak transcription	Primary monocytes fromperipheralblood	blood
13	chr1:61554600-61565800	Weak transcription	Gastric	stomach
14	chr1:61554600-61567000	Weak transcription	NHLF	lung
15	chr1:61554600-61581200	Weak transcription	Esophagus	oesophagus
16	chr1:61554800-61559200	Weak transcription	Rectal Mucosa Donor 29	rectum
17	chr1:61554800-61561200	Active TSS	Fetal Brain Female	brain
18	chr1:61554800-61563200	Weak transcription	Monocytes-CD14+_RO01746	blood
19	chr1:61555000-61563000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr1:61555200-61559200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr1:61555400-61565800	Weak transcription	Fetal Muscle Leg	muscle
22	chr1:61555800-61560200	Enhancers	Liver	Liver
23	chr1:61555800-61563000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr1:61556200-61561400	Enhancers	Rectal Smooth Muscle	rectum
25	chr1:61556200-61569600	Weak transcription	Primary hematopoietic stem cells	blood
26	chr1:61556400-61559600	Weak transcription	HUVEC	blood vessel
27	chr1:61556400-61560800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr1:61556400-61560800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr1:61556600-61559600	Weak transcription	Fetal Stomach	stomach
30	chr1:61556600-61563000	Weak transcription	HSMM	muscle
31	chr1:61556600-61567000	Weak transcription	HSMMtube	muscle
32	chr1:61556600-61573200	Weak transcription	Fetal Muscle Trunk	muscle
33	chr1:61556800-61559200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr1:61556800-61561200	Enhancers	Muscle Satellite Cultured Cells	--
35	chr1:61556800-61561600	Enhancers	Cortex derived primary cultured neurospheres	brain
36	chr1:61557200-61561400	Enhancers	Brain Anterior Caudate	brain
37	chr1:61557400-61559600	Genic enhancers	K562	blood
38	chr1:61557600-61559200	Strong transcription	A549	lung
39	chr1:61557800-61564200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
40	chr1:61558000-61561400	Enhancers	Fetal Lung	lung
41	chr1:61558600-61559200	Weak transcription	Right Atrium	heart
42	chr1:61558600-61559200	Enhancers	Skeletal Muscle Female	skeletal muscle
43	chr1:61558600-61559200	Weak transcription	HepG2	liver
44	chr1:61558600-61559400	Weak transcription	Aorta	Aorta
45	chr1:61558600-61559400	Enhancers	Brain Hippocampus Middle	brain
46	chr1:61558600-61559400	Enhancers	Fetal Brain Male	brain
47	chr1:61558600-61559400	Weak transcription	Psoas Muscle	Psoas
48	chr1:61558600-61559400	Enhancers	Skeletal Muscle Male	skeletal muscle
49	chr1:61558600-61559600	Weak transcription	Brain Angular Gyrus	brain
50	chr1:61558600-61559600	Weak transcription	Stomach Mucosa	stomach

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